View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8026_low_4 (Length: 440)
Name: NF8026_low_4
Description: NF8026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8026_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 16 - 421
Target Start/End: Original strand, 12355751 - 12356156
Alignment:
| Q |
16 |
gtattttcagttgcagtaaacatctctttgtattaataaagttttgccaatgaaagaactaaattggactctaaatctaaaatgattaagctacctcatc |
115 |
Q |
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| T |
12355751 |
gtattttcagttgcagtaaacatctctttgtattaataaagttttgccaatgaaagaaccaaattggactctaaatctaaaatgattaagctacctcatc |
12355850 |
T |
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| Q |
116 |
tgaatctaaatcattttccctccttgaatttttcacagggaagaaaacatttgaaacatcacctccactgtgcaatttttgtacccaaagaaagagtcag |
215 |
Q |
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| T |
12355851 |
tgaatctaaatcattttccctccttgaatttttcacagggaagaaaacatttgaaacatcacctccactgtgcaatttttgtacccaaagaaagagtcag |
12355950 |
T |
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| Q |
216 |
aaatcacgaactttcaatcttgataaaatcacaaactaggctgaagtgagggtcattgaaaacataggactcaatctaatctcagatacgagataaaata |
315 |
Q |
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| T |
12355951 |
aaatcacgaactttcaatcttgagaaaatcacaaactaggctgaagtgagggtcattgaaaacataggactcaatctaatctcagatacgagataaaaca |
12356050 |
T |
|
| Q |
316 |
tcacttaaatatttacgcactttcgaaatttgaaaatcaaattgagatgattagagttatccatgaggaatgtgattacagttttacaaagatcacaaga |
415 |
Q |
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| T |
12356051 |
tcacttaaatatttacgcactttcgaaatttgcaaatcaaattgagatgattagagttatccatgaggaatgtaattacagttttacaaagatcacaaga |
12356150 |
T |
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| Q |
416 |
accaag |
421 |
Q |
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| T |
12356151 |
gccaag |
12356156 |
T |
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