View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8026_low_5 (Length: 391)
Name: NF8026_low_5
Description: NF8026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8026_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 39228361 - 39227985
Alignment:
| Q |
1 |
tttctgtttcttcatcatcatcacttcctatgtctttgaaaacacaagcttctatcttagtttctctcaaacaggattttgaatccaaaacttctttaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39228361 |
tttctgtttcttcatcatcatcacttcctatgtctttgaaaacacaagcttctatcttagtttctctcaaacaggattttgaatccaaaacttctttaaa |
39228262 |
T |
|
| Q |
101 |
aagttggaatatctctaactacatgtccctttgtactacttggtatggtattcaatgtgacacaaacaatagttctgttgtgtcactagatatatcaaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39228261 |
aagttggaatatctctaactacatgtccctttgtactacttggtatggtattcaatgtgacacaaacaatagttctgttgtgtcactggatatatcaaac |
39228162 |
T |
|
| Q |
201 |
ttgaatatttctggaactttttcatcttccatcacaaaactatcaaacttgagattcctcaacatatccaacaacatgttcaatggaaatctaagttgga |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39228161 |
ttgaatgtttctggaactttttcatcttccatcacaaaactatcaaacttgagattcctcaacatatccaacaacatgttcaatggaaatctaagttgga |
39228062 |
T |
|
| Q |
301 |
aattctctcatttgaaagagcttgaagttcttgatgcttacaataatgagttcaattgttcactccctcttgatgtc |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39228061 |
aattctctcatttgaaagagcttgaagttcttgatgcttacaataatgagttcaattgttcactccctcttggtgtc |
39227985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 8 - 377
Target Start/End: Complemental strand, 25547553 - 25547184
Alignment:
| Q |
8 |
ttcttcatcatcatcacttcctatgtctttgaaaacacaagcttctatcttagtttctctcaaacaggattttgaatccaaaacttctttaaaaagttgg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25547553 |
ttcttcatcatcatcacttcctatgtctttgaaaacacaagcttctatcttagtttctctcaaacaggattttgaatccaaaacttctttaaagagttgg |
25547454 |
T |
|
| Q |
108 |
aatatctctaactacatgtccctttgtactacttggtatggtattcaatgtgacacaaacaatagttctgttgtgtcactagatatatcaaacttgaata |
207 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25547453 |
aatatctccaactacatgtccctttgtactacttggtatgatattcaatgtgacacaaacaatagttctgttttgtcactagatatatcaaacttgaatg |
25547354 |
T |
|
| Q |
208 |
tttctggaactttttcatcttccatcacaaaactatcaaacttgagattcctcaacatatccaacaacatgttcaatggaaatctaagttggaaattctc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25547353 |
tttctggaactttttcatcttccatcacaaaactatcaaacttgagattcctcaacatatccaacaacatgttcaatggaaatctaagttggaaattctc |
25547254 |
T |
|
| Q |
308 |
tcatttgaaagagcttgaagttcttgatgcttacaataatgagttcaattgttcactccctcttgatgtc |
377 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||| |
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| T |
25547253 |
tcatttgaaagagcttgaagttcttgatgcttacaacaatgagttcaattgttcactacctcttggtgtc |
25547184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 161
Target Start/End: Original strand, 16732800 - 16732931
Alignment:
| Q |
33 |
tctttgaaaacacaagcttctatcttagtttctctcaaacaggattttgaa------tccaaaacttctttaaaaagttggaatatctctaactacatgt |
126 |
Q |
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|||||||||| |||||||| ||||||||||| | ||||||||||||||| || || |||||||||| |||||||| || ||||| ||||||| |
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| T |
16732800 |
tctttgaaaaatcaagcttcaatcttagtttcaatgaaacaggattttgaaccttcttctaacacttctttaagtagttggaacatgtctaattacatgt |
16732899 |
T |
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| Q |
127 |
ccctttgtactacttggtatggtattcaatgtgac |
161 |
Q |
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| ||||||||| |||||||| |||||||||||| |
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| T |
16732900 |
cactttgtact---tggtatggaattcaatgtgac |
16732931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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