View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8026_low_7 (Length: 379)
Name: NF8026_low_7
Description: NF8026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8026_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 52850348 - 52850708
Alignment:
| Q |
1 |
ttaaaggacactttttctagtggaaatcaaactacaggagtagaaggtcatgatgttacacccaattcgaggtaaaataaatttgctgcttctcgagtag |
100 |
Q |
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| T |
52850348 |
ttaaaggacactttttctagtggaaatcaaactacaggagtagaaggtcatgatgtcacacccaattcgaggtaaaatat-tttgctgcttctcgagtag |
52850446 |
T |
|
| Q |
101 |
attttgaaatacaattcgcatttacatttgtaaacatgatcaaccatgttcattgattttcaccggacaaattagtttattttgcatgtgtcatattttt |
200 |
Q |
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| T |
52850447 |
attttgaaatacaattcgcagttacatttgtaaacatgatcaaccatgttcattgattttcaccggacaagttagtttattttgcatgtgtcatattttt |
52850546 |
T |
|
| Q |
201 |
gttatatatggtgcaagacataatgaccgatgtttcactgaaaatatgaagcatgtgatcatcccatgagatgaaacataatggctggtgtttcactttg |
300 |
Q |
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| T |
52850547 |
gttatatatggtgcaagacataatgactgatgtttcactgaaaatatgaagcatgtgatcatcccatgagatgaaacataatggctggtgtttcactttg |
52850646 |
T |
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| Q |
301 |
aatactttacatcaaacacttgcataaagtcacaattatatgctatttttatgtcatatatc |
362 |
Q |
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| T |
52850647 |
aatgctttacatcaaacacttgcataaagtcacaattatatgctatttttatgtcatatatc |
52850708 |
T |
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