View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8027_high_3 (Length: 586)
Name: NF8027_high_3
Description: NF8027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8027_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 13 - 573
Target Start/End: Complemental strand, 53808990 - 53808419
Alignment:
| Q |
13 |
aatatatcaaagtttaacccagatatagaggtgttaannnnnnnncttagaaaaagattagtggtgttcttcacttcgactttaatgactctattcgcgt |
112 |
Q |
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| T |
53808990 |
aatatatcaaagtttaacccacattttgaggtgttaattttttttcttagaaaaagattagcggtgttcttcacttcgactttaatgactctattcacgt |
53808891 |
T |
|
| Q |
113 |
ctttttgtgcataagtgaagcaccttatcaattacgttgtgtttcgttgtctaattaaaagtgtgaatagattaagtcggtcgcaaagaactatagccta |
212 |
Q |
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| T |
53808890 |
ctttttgtgcataagtgaagcaccttctcaattacgttgtgtttcgttgtctaattaaaagtgtgaatagattaagtcggtcgcaaagaactatagccta |
53808791 |
T |
|
| Q |
213 |
cattaattttggtgttatctataac------aaacagtttccatgggcatgtctattctaatgatctaatgaagggtactaacttccatatgaggatggt |
306 |
Q |
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| T |
53808790 |
cattaattttggtgttatctataactataacaaacagtttccatgggcatgtctattctaatgatctaatgaagggtactagcttccatatgaggatggt |
53808691 |
T |
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| Q |
307 |
atagtacaatgtaacacaatcatggcatg-----ttgagaactaataagggtcatcaaattaattaatgacgttgtagaagactcttaaaacatgtctct |
401 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53808690 |
atagtacaatgtaacacaatcatggcatggcatgttgagaactagtaagggtcatcaaattaattaatgacgttgtagaagactcttaaaacatgtctct |
53808591 |
T |
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| Q |
402 |
aagggattaaattgaaagtataagttgttaaaataaagcgactttgatgatagtgaatgattaaatatagggatcaatttgatagtttaatagaatcaaa |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53808590 |
aagggattaaattgaaagtataagttgttaaaataaagtgactttgatgatagtgaatgattaaatatagggatcaatttgatagtttaatagaatcaaa |
53808491 |
T |
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| Q |
502 |
acctctttaaaatgacaatttggttaatttagcgaggataagcggacaatttgtaaccatcaccaatgaatg |
573 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||| ||||||||| |
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| T |
53808490 |
acctctttaaaatgacaatttggtcaatttagcgaggataaacagacaatttgtaaccatcatcaatgaatg |
53808419 |
T |
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