View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8027_low_10 (Length: 205)
Name: NF8027_low_10
Description: NF8027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8027_low_10 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 39954541 - 39954745
Alignment:
| Q |
1 |
gatgaagtaatgaaattaagagaagagatagaactactcagaaaagagaatgaagcgcataaggacaaactcaagcagaaagagaccattagtaatgaag |
100 |
Q |
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| T |
39954541 |
gatgaagtaatgaaattaagagaagagatagaactactcagaaaagagaatgaagcgcataaggacaaactcaagcagaaagagaccattagtaatgaag |
39954640 |
T |
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| Q |
101 |
tagtaaagaagttgagggaagaaatagaacaactgaagaaagtgaataatgcacagaaggatggactcaatcagaaagataccatttgtaatgacgtaat |
200 |
Q |
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| T |
39954641 |
tagtaaagaagttgagggaagaaatagaacaactgaagaaagtgaataatgcacagaaggatggactcaatcagaaagataccatttgtaatgacgtaat |
39954740 |
T |
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| Q |
201 |
gaagt |
205 |
Q |
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||||| |
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| T |
39954741 |
gaagt |
39954745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 204
Target Start/End: Original strand, 39954705 - 39954837
Alignment:
| Q |
69 |
actcaagcagaaagagaccattagtaatgaagtagtaaagaagttgagggaagaaatagaacaactgaagaaagtgaataatgcacagaaggatggactc |
168 |
Q |
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| T |
39954705 |
actcaatcagaaagataccatttgtaatgacgtaat---gaagttgagggacgagattaaacaactcgagaaagaaaatgaagcacagaagaatgaactc |
39954801 |
T |
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| Q |
169 |
aatcagaaagataccatttgtaatgacgtaatgaag |
204 |
Q |
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| T |
39954802 |
aagcagaaaggtaccatcaataatgaagtaatgaag |
39954837 |
T |
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