View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8027_low_4 (Length: 522)

Name: NF8027_low_4
Description: NF8027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8027_low_4
NF8027_low_4
[»] chr1 (1 HSPs)
chr1 (1-522)||(52466169-52466690)


Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Complemental strand, 52466690 - 52466169
Alignment:
Q  1 gtgatgttttcaggcaaggatattgttgcagtagacagtcctattgggcgtttgggccttagtgtttgctatgatttgagatttcctgagctttatcagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52466690 gtgatgttttcaggcaaggatattgttgcagtagacagtcctattgggcgtttgggccttagtgtttgctatgatttgagatttcctgagctttatcagt 52466591  T
Q  101 tgttgcgtttccaacatggagcacaggtactaaatgatagttttgcttttctgcctaaaatatgctgtttaggatctaaaactttcttgagttgtgcatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52466590 tgttgcgtttccaacatggagcacaggtactaaatgatagttttgcttttctgcctaaaatatgctgtttaggatctaaaactttcttgagttgtgcatt 52466491  T
Q  201 gtccagatactattggtgcccgcagcattcactaaagtgactggtgaagcacactgggagattcttcttcgcgctcgtgcaatcgagaatcaatgctatg 300  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  52466490 gtccagatactattggtgcctgcagcattcactaaagtgactggtgaagcacactgggagattcttcttcgtgctcgtgcaatcgagaatcaatgctatg 52466391  T
Q  301 taagagttcatttttgcacctagcaatacttcccttctcggttnnnnnnnnnnnnnnnctgctttcatcattcccatcttcatgtatattcttactcatt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||    
T  52466390 taagagttcatttttgcacctagcaatacttcccttctcggtttctctctcttctctcctgctttcatcattcccatcttcatgtatattcttactcatt 52466291  T
Q  401 atcaattatgaataagtttcaaaattattatactttgtttttcaatcttatgtttttgaaataaaagttattaagaaagctatgatgtgagttaatatat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  52466290 atcaattatgaataagtttcaaaattattatactttgtttttcaatcttatgtatttgaaataaaagttattaagaaagctatgatgtgagttaatatat 52466191  T
Q  501 ttcatctactttcttatttgcc 522  Q
    ||||||||||||||||||||||    
T  52466190 ttcatctactttcttatttgcc 52466169  T

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