View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8027_low_5 (Length: 502)
Name: NF8027_low_5
Description: NF8027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8027_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 18 - 494
Target Start/End: Complemental strand, 45129346 - 45128870
Alignment:
| Q |
18 |
ctttactgctttttgaaacatgttacatcaatcattactaattaataaaatttatgcatgtatttcaggtcattatgttcctcaacttgcaaagcttatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45129346 |
ctttactgctttttgaaacatgttacatcaatcattactaattaataaaatttatgcatgtatttcaggtcattatgttcctcaacttgcaaagcttatg |
45129247 |
T |
|
| Q |
118 |
attgaaatgaacaaaagaaacaagatattcaaccttaaaggcatagcggtaagtaatgctacattgatgannnnnnnnattccatacaatttgctagctg |
217 |
Q |
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| T |
45129246 |
attgaaatgaacaaaagaaacaagatattcaaccttaaaggcatagccgtaagtaaggctacattgatgattttttttattccatacaatttgctagctg |
45129147 |
T |
|
| Q |
218 |
ttgataccaaagttgaattgcagttgggaaatccagttctagaatatgcaactgatttcaattcaagggctgaattcttttggtcacatggactaatatc |
317 |
Q |
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| T |
45129146 |
ttgataccaaagttgaattgcagttgggaaatccagttctagaatatgcaactgatttcaattcaagggctgaattcttttggtcacatggactaatatc |
45129047 |
T |
|
| Q |
318 |
agatgcaacttacaacatgttcactagagtgtgtaattactctcgttatgtaagtgagtacaatagagactcagtttcacctctttgttcaaaggttatg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45129046 |
agatgcaacttacaacatgttcactagagtgtgtaattactctcgttatgtaagtgagtacaatagagactcagtttcacctctttgttcaaaggttatg |
45128947 |
T |
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| Q |
418 |
ggattggtgagtaaagaaactagtagatttgtggacaaatatgatgtcactcttgatgtttgcatttcctctctgct |
494 |
Q |
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| T |
45128946 |
ggattggtgagtaaagaaactagtagatttgtggacaaatatgatgtcactcttgatgtttgcatttcctctgtgct |
45128870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 234 - 488
Target Start/End: Complemental strand, 40280985 - 40280731
Alignment:
| Q |
234 |
attgcagttgggaaatccagttctagaatatgcaactgatttcaattcaagggctgaattcttttggtcacatggactaatatcagatgcaacttacaac |
333 |
Q |
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||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| ||||| ||||| |||||| | ||||||||| |||||||||| |
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| T |
40280985 |
attgcagttgggaaatccacttctagaatatgccactgacttcaattcaagggctgagttcttctggtctcatggattgatatcagattcaacttacaaa |
40280886 |
T |
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| Q |
334 |
atgttcactagagtgtgtaattactctcgttatgtaagtgagtacaatagagactcagtttcacctctttgttcaaaggttatgggattggtgagtaaag |
433 |
Q |
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| T |
40280885 |
atgttcaccgcaggctgcaattattcgcagtatgtaagtgagtactatagaaactccatttccctgctttgttcaaaggtcatgagccaagtaagcagag |
40280786 |
T |
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| Q |
434 |
aaactagtagatttgtggacaaatatgatgtcactcttgatgtttgcatttcctc |
488 |
Q |
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| T |
40280785 |
aaaccagcaagtttgtggacaaatatgatgttacccttgatgtatgcatttcctc |
40280731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 309
Target Start/End: Complemental strand, 6632346 - 6632284
Alignment:
| Q |
247 |
aatccagttctagaatatgcaactgatttcaattcaagggctgaattcttttggtcacatgga |
309 |
Q |
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| T |
6632346 |
aatccagttttagaatttgcaacagattttaattcaagagctgagttcttttggtctcatgga |
6632284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 479
Target Start/End: Complemental strand, 6632166 - 6632114
Alignment:
| Q |
427 |
agtaaagaaactagtagatttgtggacaaatatgatgtcactcttgatgtttg |
479 |
Q |
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|||| |||||| || |||||||| ||||| ||||||||||||||||||||||| |
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| T |
6632166 |
agtacagaaacaagcagatttgttgacaagtatgatgtcactcttgatgtttg |
6632114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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