View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8027_low_7 (Length: 363)
Name: NF8027_low_7
Description: NF8027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8027_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 3 - 349
Target Start/End: Complemental strand, 31657018 - 31656675
Alignment:
| Q |
3 |
atttctcatattaaaaatattacaattatatcttaagagtggtgcatgatgttgactaatctttattctcaagtggatgtagatggaaattatgaaattg |
102 |
Q |
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| T |
31657018 |
atttctcatattaaaaatattacaattatatctaa---gtggtgcatgatgttgactaatctttattctcaagtggatgtagatggaaattatgaaattg |
31656922 |
T |
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| Q |
103 |
ataagtacctgaaatatttggcatttgttaacattttttgtccgtactttctccatgtatgaccatcatcaatcaatattgaggccgtcttttcccaagt |
202 |
Q |
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| T |
31656921 |
ataagtacctgaaatatttggcatttgttaacattttttgtccgtactttctccatgtatgaccatcatcgatcaatattgatgccgtcttttcccaagt |
31656822 |
T |
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| Q |
203 |
tggtgcacttgaccttatatcatgacaaaaatatcagttaattaagccattattttcataagtactgtacttaatactggatcaaattgaagaaaaatat |
302 |
Q |
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| T |
31656821 |
tggtgcacttgaccttatatgatgacaaaaatatcagttaattaagccattattttcgtaagtactatacttaatactggatcaaattgaagaaaaatat |
31656722 |
T |
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| Q |
303 |
ttgtaaattaatagatctataattattccattcagtatgtagtgatg |
349 |
Q |
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| T |
31656721 |
ttgtaaattaatagatctataattattccatttagtatgtagtgatg |
31656675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 108 - 243
Target Start/End: Complemental strand, 31650005 - 31649870
Alignment:
| Q |
108 |
tacctgaaatatttggcatttgttaacattttttgtccgtactttctccatgtatgaccatcatcaatcaatattgaggccgtcttttcccaagttggtg |
207 |
Q |
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| T |
31650005 |
tacctgaaatatttggcatttgtgatcattttttgtccgtactttctccatgtatgaccatcatcaatcaatttggaggccgtcttttcccaagttggtg |
31649906 |
T |
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| Q |
208 |
cacttgaccttatatcatgacaaaaatatcagttaa |
243 |
Q |
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| T |
31649905 |
cacttgaccttatatgatgacaaaaataacagttaa |
31649870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 31660089 - 31660172
Alignment:
| Q |
136 |
ttttttgtccgtactttctccatgtatgaccatcatcaatcaatattgaggccgtcttttcccaagttggtgcacttgacctta |
219 |
Q |
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|||||||||| ||||||||||| | |||||| ||||| ||||||||||||| | | |||||||||||||||| | ||||||||| |
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| T |
31660089 |
ttttttgtccatactttctccaagcatgaccgtcatccatcaatattgaggtccttttttcccaagttggtgaaattgacctta |
31660172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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