View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8027_low_8 (Length: 313)

Name: NF8027_low_8
Description: NF8027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8027_low_8
NF8027_low_8
[»] chr7 (4 HSPs)
chr7 (15-148)||(38644026-38644159)
chr7 (34-105)||(13597704-13597775)
chr7 (262-299)||(38644284-38644321)
chr7 (151-184)||(38644173-38644206)
[»] chr3 (1 HSPs)
chr3 (28-105)||(37609886-37609963)
[»] chr2 (1 HSPs)
chr2 (17-105)||(38235520-38235608)


Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 148
Target Start/End: Original strand, 38644026 - 38644159
Alignment:
Q  15 atcaccaccaacgccgccgccgtgccgtaaacatgagaagacgaagctacaagtaagcgaaggatcagagtgggaactcagaaccggaatcataatcgaa 114  Q
    |||||||||||||||||| |||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38644026 atcaccaccaacgccgccaccgtgctgtaagtatgagaagacgaagctacaagtaagcgaaggatcagagtgggaactcagaaccggaatcagaatcgaa 38644125  T
Q  115 atggtcggagtgagcttaggtagacggaaaggga 148  Q
    |||||||||||||||||||||||||| |||||||    
T  38644126 atggtcggagtgagcttaggtagacgaaaaggga 38644159  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 13597704 - 13597775
Alignment:
Q  34 ccgtgccgtaaacatgagaagacgaagctacaagtaagcgaaggatcagagtgggaactcagaaccggaatc 105  Q
    |||||||| ||||| |||||||||||| ||||||||||| ||||||||||| ||||||||| ||||||||||    
T  13597704 ccgtgccggaaacaagagaagacgaagttacaagtaagcaaaggatcagagagggaactcataaccggaatc 13597775  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 262 - 299
Target Start/End: Original strand, 38644284 - 38644321
Alignment:
Q  262 ttgttaattttgttacacttgttcccagaagatgatgt 299  Q
    |||||||||||||||||||||||||| |||||||||||    
T  38644284 ttgttaattttgttacacttgttccctgaagatgatgt 38644321  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 38644173 - 38644206
Alignment:
Q  151 ccaccgccgaaggttgttggggacacaaacgacg 184  Q
    ||||||||| ||||||||||||||||||||||||    
T  38644173 ccaccgccggaggttgttggggacacaaacgacg 38644206  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 37609886 - 37609963
Alignment:
Q  28 ccgccgccgtgccgtaaacatgagaagacgaagctacaagtaagcgaaggatcagagtgggaactcagaaccggaatc 105  Q
    ||||| |||||||| ||||| |||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||    
T  37609886 ccgccaccgtgccggaaacaagagaagacgaagttacaagtaagcgaaggatcagagagggaactcataaccggaatc 37609963  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 38235520 - 38235608
Alignment:
Q  17 caccaccaacgccgccgccgtgccgtaaacatgagaagacgaagctacaagtaagcgaaggatcagagtgggaactcagaaccggaatc 105  Q
    |||||||| | ||||| |||||||| ||||| ||||||| |||| ||||||||| ||||||||||||| ||||||||||||||||||||    
T  38235520 caccaccaccaccgccaccgtgccggaaacaagagaagatgaagttacaagtaaacgaaggatcagagagggaactcagaaccggaatc 38235608  T

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