View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8028_high_2 (Length: 437)
Name: NF8028_high_2
Description: NF8028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8028_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 27 - 416
Target Start/End: Complemental strand, 9356608 - 9356214
Alignment:
| Q |
27 |
acatgagagaaaataacaaatttttcaagcaatttaaaggattaaatgaaaattattgttaaatgaggttaatgcaacttcaatcgaagttgcaaagaca |
126 |
Q |
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| T |
9356608 |
acatgagagaagattgcaaaattttcaagcaatttaaaggtttaaatgagaatcgttgttaaatgaggccgatgcagcttcaatcgaagttgtaaagaaa |
9356509 |
T |
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| Q |
127 |
tgaaaaaatca-----gatatttcaattattgtcgtagtcgcggaccaatattaaaaattgtttgataagctaaaataaaggattcaaagtatacctatt |
221 |
Q |
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| T |
9356508 |
taaaaaaaaaaaatttgatattgcaattattgttctagccgcggaccaatatttaaaattgtttgataagataaactaaaggattcaaagtatacccatt |
9356409 |
T |
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| Q |
222 |
tgtgaactagctaaaggcctagtgagattgagattgaattcatcaatgggacttgttatggcaaattttgctggtatttcatatgttagcttttcctttc |
321 |
Q |
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| T |
9356408 |
tgagaactaggtaaaggcctagtgaggttgagattggattcatcaatgggacttgtgatggcaaattttgctgggatttcatatgttagcttttcctttc |
9356309 |
T |
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| Q |
322 |
ttgcaatagatgatagtagttccctttgcctcctagccttgatcacatgaaaatgattcttcacagcattgtctgtccttccaggaaagtgtttg |
416 |
Q |
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| T |
9356308 |
ttgcaatagatgataggagttccctttgcctcctagccttgatcacatggtaatgattctttagtgcattgtctctccttcctggaaaatgtttg |
9356214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 138 - 416
Target Start/End: Complemental strand, 9348467 - 9348189
Alignment:
| Q |
138 |
gatatttcaattattgtcgtagtcgcggaccaatattaaaaattgtttgataagctaaaataaaggattcaaagtatacctatttgtgaactagctaaag |
237 |
Q |
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| T |
9348467 |
gatattgcaattattgttctagccgcggaccaatatttaaaattgtttgataagataaactaaaggattcaaagtatacccatttgagaactaggtaaag |
9348368 |
T |
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| Q |
238 |
gcctagtgagattgagattgaattcatcaatgggacttgttatggcaaattttgctggtatttcatatgttagcttttcctttcttgcaatagatgatag |
337 |
Q |
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| T |
9348367 |
gcctagtgaggttgagattggattcatcaatgggacttgtgatggcaaattttgctgggatttcatatgttagcttttcctttcttgcaatagatgatag |
9348268 |
T |
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| Q |
338 |
tagttccctttgcctcctagccttgatcacatgaaaatgattcttcacagcattgtctgtccttccaggaaagtgtttg |
416 |
Q |
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| T |
9348267 |
gagttccctttgcctcctagccttgatcacatggtaatgattctttagtgcattgtctctccttcctggaaaatgtttg |
9348189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 9348549 - 9348473
Alignment:
| Q |
14 |
aatataaactaaaacatgagagaaaataacaaatttttcaagcaatttaaaggattaaatgaaaattattgttaaat |
90 |
Q |
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| T |
9348549 |
aatataaactaaaacatgagagaaaataacaaatttttcaagcaatttaaaggattaaatgaaaattattgttaaat |
9348473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 288 - 410
Target Start/End: Complemental strand, 9360890 - 9360768
Alignment:
| Q |
288 |
tttgctggtatttcatatgttagcttttcctttcttgcaatagatgatagtagttccctttgcctcctagccttgatcacatgaaaatgattcttcacag |
387 |
Q |
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| T |
9360890 |
tttgctgggatttgaaatgttagctttctctttcttgaaatagatgataatagttccctttgcttcctagccataatcacatgaaaatgattcttcagtg |
9360791 |
T |
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| Q |
388 |
cattgtctgtccttccaggaaag |
410 |
Q |
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| T |
9360790 |
cattgtctgtccttccaggaaag |
9360768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 409
Target Start/End: Original strand, 33825640 - 33825709
Alignment:
| Q |
340 |
gttccctttgcctcctagccttgatcacatgaaaatgattcttcacagcattgtctgtccttccaggaaa |
409 |
Q |
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| T |
33825640 |
gttccctatgtcttctagccatgatcacatgccaatgattcttcactgcattatctgtcctccctggaaa |
33825709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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