View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8028_high_5 (Length: 356)
Name: NF8028_high_5
Description: NF8028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8028_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 340
Target Start/End: Complemental strand, 5274844 - 5274512
Alignment:
| Q |
11 |
ttattcttggtttggactttgggtaaaaagagattaggtgtgtgttttttgtatattatttgtatgaatgacatgcgagtgaaatgtgcacctcaaacaa |
110 |
Q |
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| T |
5274844 |
ttattcttggtttggactttgggtaaaaagagattaggtgtgtgttttttgtatattaattgtatgaataacatgcgagtgaaatgtgcacctcaaacaa |
5274745 |
T |
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| Q |
111 |
gagattaatgtgtatacaatgcagccacgaatacaagctatgatctttttataaactata--tannnnnnnngaaagaatctttttataaactatattga |
208 |
Q |
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| T |
5274744 |
gagattaatgtgtatacaatgcagccacgaatacatgctatgatctttttataaattatattttttttttttgaaagaatctttttataaactatattga |
5274645 |
T |
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| Q |
209 |
tatgatatactcatgattgatgattaatacaa-nnnnnnnngggtacaaattaatacaatctctttatccgtatataaagtgtacataagtggcatgata |
307 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5274644 |
tatgatatactcatgattgatgattaatacaatttttttttgggtacaaattaatacaatctctttatccgtatataaagtgtacataagtggcatgata |
5274545 |
T |
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| Q |
308 |
cttccaagataacatgcatggttaaaaaattac |
340 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
5274544 |
cttccaagataacatgcatggttaaaaaattac |
5274512 |
T |
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