View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8028_high_6 (Length: 348)
Name: NF8028_high_6
Description: NF8028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8028_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 42734168 - 42733847
Alignment:
| Q |
18 |
gtatttgatctaaaaccgactaattcaagagatttcatcccgttgtccacttgcagacccatttgactagatatattaattgaaactttatcctaatatc |
117 |
Q |
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| T |
42734168 |
gtatttgatctaaaaccgactaattcaagagatttcatcccgtcgtccacttgcagacccatttgactagatatattaattgaaactttatcctaatatc |
42734069 |
T |
|
| Q |
118 |
ccactaacagttaatccttccattccaaaatataggatttgatcattagtttaacttaatcacaatttcatttttctcaatcacaaataacaactccatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42734068 |
ccactaacagttaatccttccattccaaaatataggatttgatcattagtttaacttaatcacaatttcatttttctcaatcacaaataacaactccatg |
42733969 |
T |
|
| Q |
218 |
atctccattagctgagctactcgagtcttatctcatcttaatttgtgctttggaccctataaattgtcttttagtcacagcgttttacatataccgaaac |
317 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42733968 |
atttccattagctgagctactcgagtcttatctcatcttaatttgtgctttggaccctataaattgtcttttagtcacagcgttttacatacaccgaaac |
42733869 |
T |
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| Q |
318 |
catttttcactcttttcttctc |
339 |
Q |
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|||||||||||||||||||||| |
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| T |
42733868 |
catttttcactcttttcttctc |
42733847 |
T |
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