View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8028_low_12 (Length: 212)
Name: NF8028_low_12
Description: NF8028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8028_low_12 |
 | |
|
| [»] scaffold0002 (2 HSPs) |
| |
|
| [»] chr3 (18 HSPs) |
| |
|
| [»] scaffold0083 (1 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
| |
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Alignment Details
Target: scaffold0002 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 146409 - 146620
Alignment:
| Q |
1 |
tctttcagttgatccatccattgtttgacagcagtgttggtgatttgcttcagttctgcatcatccagcaccgcctgaagagtgagcagtgttgtttcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
146409 |
tctttcagttgatccatccattgtttgacagcagtgttggtgatttgcttcagttctgcatcatccagcaccacctgaagagcgagcagtgttgtttcca |
146508 |
T |
|
| Q |
101 |
actctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
146509 |
actctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttcgcaactaaagtctgaacagtagcagagag |
146608 |
T |
|
| Q |
201 |
aaaagcccctcc |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
146609 |
aaaagcccctcc |
146620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 136358 - 136569
Alignment:
| Q |
1 |
tctttcagttgatccatccattgtttgacagcagtgttggtgatttgcttcagttctgcatcatccagcaccgcctgaagagtgagcagtgttgtttcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||| ||||||||||||||||| |
|
|
| T |
136358 |
tctttcagttgatccatccattgtttgacagcagtgttggtgatttgcttctgttctgcatcatcaagaaccgcctgaagagcgagcagtgttgtttcca |
136457 |
T |
|
| Q |
101 |
actctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
136458 |
actctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagag |
136557 |
T |
|
| Q |
201 |
aaaagcccctcc |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
136558 |
aaaagcccctcc |
136569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 18)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 13160579 - 13160368
Alignment:
| Q |
1 |
tctttcagttgatccatccattgtttgacagcagtgttggtgatttgcttcagttctgcatcatccagcaccgcctgaagagtgagcagtgttgtttcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
13160579 |
tctttcagttgatccatccattgtttgacagcagtgttggtgatttgcttcagttctgcatcatccagcaccacctgaagagcgagcagtgttgtttcca |
13160480 |
T |
|
| Q |
101 |
actctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13160479 |
actctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttcgcaactaaagtctgaacagtagcagagag |
13160380 |
T |
|
| Q |
201 |
aaaagcccctcc |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
13160379 |
aaaagcccctcc |
13160368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 13170630 - 13170419
Alignment:
| Q |
1 |
tctttcagttgatccatccattgtttgacagcagtgttggtgatttgcttcagttctgcatcatccagcaccgcctgaagagtgagcagtgttgtttcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||| ||||||||||||||||| |
|
|
| T |
13170630 |
tctttcagttgatccatccattgtttgacagcagtgttggtgatttgcttctgttctgcatcatcaagaaccgcctgaagagcgagcagtgttgtttcca |
13170531 |
T |
|
| Q |
101 |
actctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13170530 |
actctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagag |
13170431 |
T |
|
| Q |
201 |
aaaagcccctcc |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
13170430 |
aaaagcccctcc |
13170419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 13332503 - 13332292
Alignment:
| Q |
1 |
tctttcagttgatccatccattgtttgacagcagtgttggtgatttgcttcagttctgcatcatccagcaccgcctgaagagtgagcagtgttgtttcca |
100 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13332503 |
tctttcagctgatccaaccattgtttgacagcagtgttggtgatttgcttctgttctgcatcatccagcaccgcctgaagagcgagcagtgttgtttcca |
13332404 |
T |
|
| Q |
101 |
actctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13332403 |
actctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagag |
13332304 |
T |
|
| Q |
201 |
aaaagcccctcc |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
13332303 |
aaaagcccctcc |
13332292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 13289264 - 13289053
Alignment:
| Q |
1 |
tctttcagttgatccatccattgtttgacagcagtgttggtgatttgcttcagttctgcatcatccagcaccgcctgaagagtgagcagtgttgtttcca |
100 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||| |
|
|
| T |
13289264 |
tctttcagctgatccaaccattgtttgacagcagtgttggtgatttgcttcagttctgcatcatccagcaccacctgaagagcgagtagtgttgtttcca |
13289165 |
T |
|
| Q |
101 |
actctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagag |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13289164 |
actctgccaagagtgaggaattcagcttgttgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagag |
13289065 |
T |
|
| Q |
201 |
aaaagcccctcc |
212 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
13289064 |
aaaagctcctcc |
13289053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 13343688 - 13343477
Alignment:
| Q |
1 |
tctttcagttgatccatccattgtttgacagcagtgttggtgatttgcttcagttctgcatcatccagcaccgcctgaagagtgagcagtgttgtttcca |
100 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13343688 |
tctttcagctgatccaaccattgtttgacagcagtgttggtgatttgcttatgttctgcatcatccagcaccgcctgaagagcgagcagtgttgtttcca |
13343589 |
T |
|
| Q |
101 |
actctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagag |
200 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13343588 |
actctgcaaacagcgaggaattcagcttggtgtttcttatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagag |
13343489 |
T |
|
| Q |
201 |
aaaagcccctcc |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
13343488 |
aaaagcccctcc |
13343477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 10434531 - 10434725
Alignment:
| Q |
18 |
ccattgtttgacagcagtgttggtgatttgcttcagttctgcatcatccagcaccgcctgaagagtgagcagtgttgtttccaactctgccaacagtgag |
117 |
Q |
| |
|
||||||||||||||||| ||| |||| |||||| ||||||||||||||||| | ||||||||||| |||||||||| || || ||| |||||| |
|
|
| T |
10434531 |
ccattgtttgacagcaggtttgttgatctgcttctcctctgcatcatccagcacaacttgaagagtgagaagtgttgttttcagctgcctcaagagtgag |
10434630 |
T |
|
| Q |
118 |
gaattcagcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagagaaaagcccctcc |
212 |
Q |
| |
|
||| |||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| || |||||||| |||||||||||||| ||||| |
|
|
| T |
10434631 |
tcattgagcttggtgtttttgatgtaatcacgaaactcttttgaagcaagtttctcaactaaggtttgaacagttgcagagagaaaagctcctcc |
10434725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 10364285 - 10364479
Alignment:
| Q |
18 |
ccattgtttgacagcagtgttggtgatttgcttcagttctgcatcatccagcaccgcctgaagagtgagcagtgttgtttccaactctgccaacagtgag |
117 |
Q |
| |
|
||||||||||||||||| ||| |||| |||||| |||||| ||||||||||| | |||||||||||||||||||||| |||| ||| |||||| |
|
|
| T |
10364285 |
ccattgtttgacagcaggattgttgatctgcttctcttctgcgtcatccagcacaacttgaagagtgagcagtgttgtttgtaactgcctcaagagtgag |
10364384 |
T |
|
| Q |
118 |
gaattcagcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagagaaaagcccctcc |
212 |
Q |
| |
|
||| || ||||||||| ||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
10364385 |
tcattgagtttggtgtttttgatgtaatcaagaaactctgttgaagcaagtttctcaactaaggtctgaacagttgcagagagaaaagctcctcc |
10364479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 10376332 - 10376526
Alignment:
| Q |
18 |
ccattgtttgacagcagtgttggtgatttgcttcagttctgcatcatccagcaccgcctgaagagtgagcagtgttgtttccaactctgccaacagtgag |
117 |
Q |
| |
|
|||||| ||||||| || ||| |||| |||||| ||||||||||||||||| | |||||||||||||||||||||| |||| ||| |||||| |
|
|
| T |
10376332 |
ccattgcttgacagaaggattgatgatctgcttctcctctgcatcatccagcacaacttgaagagtgagcagtgttgtttttaactgcctcaagagtgag |
10376431 |
T |
|
| Q |
118 |
gaattcagcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagagaaaagcccctcc |
212 |
Q |
| |
|
||| || ||||||||| ||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
10376432 |
acattgagtttggtgtttttgatgtaatcaagaaactctgttgaagcaagtttctcaactaaggtctgaacagttgcagagagaaaagcacctcc |
10376526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 10195255 - 10195067
Alignment:
| Q |
18 |
ccattgtttgacagcagtgttggtgatttgcttcagttctgcatcatccagcaccgcctgaagagtgagcagtgttgtttccaactctgccaacagtgag |
117 |
Q |
| |
|
|||| |||||||||||| ||| |||| |||||| || |||||||||||||| | |||||||||||||||||||||| || || ||| |||||| |
|
|
| T |
10195255 |
ccatagtttgacagcaggattgttgatctgcttctcctccgcatcatccagcacaacttgaagagtgagcagtgttgttttcagctgcctcaagagtgag |
10195156 |
T |
|
| Q |
118 |
gaattcagcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagagaaaagc |
206 |
Q |
| |
|
||||| |||||||||| |||||||||||| ||||||| |||||||||||||||||| || ||||||| ||| |||||||||||||| |
|
|
| T |
10195155 |
acattcaacttggtgtttttgatgtaatcacgaaactctgttgaagcaagtttctcaaccaaggtctgaatagttgcagagagaaaagc |
10195067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 10088372 - 10088184
Alignment:
| Q |
18 |
ccattgtttgacagcagtgttggtgatttgcttcagttctgcatcatccagcaccgcctgaagagtgagcagtgttgtttccaactctgccaacagtgag |
117 |
Q |
| |
|
|||| |||||||||||| ||| |||| |||||| || |||||||||||||| | |||||||||||||||||||||| || || | | |||||| |
|
|
| T |
10088372 |
ccatagtttgacagcaggattgttgatctgcttctcctccgcatcatccagcacaacttgaagagtgagcagtgttgttttcagctgcctcgagagtgag |
10088273 |
T |
|
| Q |
118 |
gaattcagcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagagaaaagc |
206 |
Q |
| |
|
||||| |||||||||| |||||||||||| ||||||| |||||||||||||||||| || ||||||| ||| |||||||||||||| |
|
|
| T |
10088272 |
acattcaacttggtgtttttgatgtaatcacgaaactctgttgaagcaagtttctcaaccaaggtctgaatagttgcagagagaaaagc |
10088184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 10580183 - 10579989
Alignment:
| Q |
18 |
ccattgtttgacagcagtgttggtgatttgcttcagttctgcatcatccagcaccgcctgaagagtgagcagtgttgtttccaactctgccaacagtgag |
117 |
Q |
| |
|
|||| |||||||||||| || |||| |||||| ||||||||||||||||| | |||||||||||||||||||||| | || ||| |||||| |
|
|
| T |
10580183 |
ccatagtttgacagcaggattattgatctgcttctcctctgcatcatccagcacaacttgaagagtgagcagtgttgttttaagctgcctcaagagtgag |
10580084 |
T |
|
| Q |
118 |
gaattcagcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagagaaaagcccctcc |
212 |
Q |
| |
|
||| ||||| |||||| ||||||||||| |||||| ||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||| |
|
|
| T |
10580083 |
acattgagcttagtgtttttgatgtaatcaagaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcagagaggaaagcacctcc |
10579989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 55 - 212
Target Start/End: Complemental strand, 9838406 - 9838249
Alignment:
| Q |
55 |
tctgcatcatccagcaccgcctgaagagtgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaact |
154 |
Q |
| |
|
||||||||||| || || ||||||||| |||||| |||| || |||| ||| |||||| ||| ||||| |||||| |||||||||||| ||||| |
|
|
| T |
9838406 |
tctgcatcatctagaacagcctgaagattgagcatggttgcttgtaactgcctcaagagtgagacattgagcttagtgtttttgatgtaatcacgaaact |
9838307 |
T |
|
| Q |
155 |
cttgtgaagcaagtttctcaactaaagtctgaacagtagcagagagaaaagcccctcc |
212 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
9838306 |
cagttgaagcaagtttctcaactaaggtctgaacagttgcagagagaaaagcgcctcc |
9838249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 55 - 212
Target Start/End: Complemental strand, 9849284 - 9849127
Alignment:
| Q |
55 |
tctgcatcatccagcaccgcctgaagagtgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaact |
154 |
Q |
| |
|
||||||||||| || || ||||||||| |||||| |||| || |||| ||| |||||| ||| ||||| |||||| |||||||||||| ||||| |
|
|
| T |
9849284 |
tctgcatcatctagaacagcctgaagattgagcatggttgcttgtaactgcctcaagagtgagacattgagcttagtgtttttgatgtaatcacgaaact |
9849185 |
T |
|
| Q |
155 |
cttgtgaagcaagtttctcaactaaagtctgaacagtagcagagagaaaagcccctcc |
212 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
9849184 |
cagttgaagcaagtttctcaactaaggtctgaacagttgcagagagaaaagcgcctcc |
9849127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 10505248 - 10505180
Alignment:
| Q |
137 |
tgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagagaaaag |
205 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||| |||||||| ||||||||||| ||||||||||||| |
|
|
| T |
10505248 |
tgatgtaatcacgaaactctgttgaagcaagtttgtcaactaaggtctgaacagttgcagagagaaaag |
10505180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 212
Target Start/End: Complemental strand, 11768776 - 11768622
Alignment:
| Q |
58 |
gcatcatccagcaccgcctgaagagtgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaactctt |
157 |
Q |
| |
|
||||||||||| || |||||||| |||||||| ||||||| || | ||| |||||| |||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
11768776 |
gcatcatccagtacagcctgaagtgtgagcagggttgtttttaattgcctcaagagtgagacattcagcttggtgtttttgatgtaatcaagaaactctg |
11768677 |
T |
|
| Q |
158 |
gtgaagcaagtttctcaactaaagtctgaacagtagcagagagaaaagcccctcc |
212 |
Q |
| |
|
||||||||||||||||| || || || | ||| || ||||||||||| ||||| |
|
|
| T |
11768676 |
ttgaagcaagtttctcaaacaaggtttgcatagttgccgagagaaaagcgcctcc |
11768622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 212
Target Start/End: Complemental strand, 10076811 - 10076654
Alignment:
| Q |
55 |
tctgcatcatccagcaccgcctgaagagtgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaact |
154 |
Q |
| |
|
||||||||||| || || ||||||||| |||||| ||||||| |||| | || ||||| |||||| || |||||| ||||||||||| ||||| |
|
|
| T |
10076811 |
tctgcatcatctagtacagcctgaagattgagcatggttgtttgtaactgtctgaagagtgatacattcagatttgtgtttttgatgtaatcaagaaact |
10076712 |
T |
|
| Q |
155 |
cttgtgaagcaagtttctcaactaaagtctgaacagtagcagagagaaaagcccctcc |
212 |
Q |
| |
|
| ||||| ||||||||||||||| ||||||||||| ||| ||||||||| ||||| |
|
|
| T |
10076711 |
cagttgaagtaagtttctcaactaaggtctgaacagttgcatggagaaaagcacctcc |
10076654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 156
Target Start/End: Complemental strand, 10526904 - 10526803
Alignment:
| Q |
55 |
tctgcatcatccagcaccgcctgaagagtgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaact |
154 |
Q |
| |
|
||||||||| ||||||| || ||||||| | || |||||||| ||| ||||||| | ||||| |||| | | |||||||||||||| || ||| ||||| |
|
|
| T |
10526904 |
tctgcatcaaccagcacagcttgaagagcaaacaatgttgttttcaattctgccagcggtgagtaattgaacctggtgtttctgatgaaaccacgaaact |
10526805 |
T |
|
| Q |
155 |
ct |
156 |
Q |
| |
|
|| |
|
|
| T |
10526804 |
ct |
10526803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 11782503 - 11782583
Alignment:
| Q |
55 |
tctgcatcatccagcaccgcctgaagagtgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgttt |
135 |
Q |
| |
|
||||||||| ||||||| || ||||||| | ||||||||||| ||||||||||| ||||| |||| ||||| |||||| |
|
|
| T |
11782503 |
tctgcatcaaccagcacagcttgaagagcaaacagtgttgttttcaactctgccagttgtgagtaattgagctttgtgttt |
11782583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 26906479 - 26906291
Alignment:
| Q |
18 |
ccattgtttgacagcagtgttggtgatttgcttcagttctgcatcatccagcaccgcctgaagagtgagcagtgttgtttccaactctgccaacagtgag |
117 |
Q |
| |
|
||||||||||||||||| ||| |||| || ||| ||||||||||||||||| |||| ||||||||||||||||||| | || ||| |||||| |
|
|
| T |
26906479 |
ccattgtttgacagcaggattgttgatctgtttctcctctgcatcatccagcacaacctgcagagtgagcagtgttgtttttagctgcctcaagagtgag |
26906380 |
T |
|
| Q |
118 |
gaattcagcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagagaaaagc |
206 |
Q |
| |
|
||| |||||||||||| ||||||||||| ||||| | |||| |||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
26906379 |
acattgagcttggtgtttttgatgtaatcaagaaactgtgttgaaacaagtttctcaactaaagtctgaacaattgcagagagaaaagc |
26906291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 50292 - 50486
Alignment:
| Q |
18 |
ccattgtttgacagcagtgttggtgatttgcttcagttctgcatcatccagcaccgcctgaagagtgagcagtgttgtttccaactctgccaacagtgag |
117 |
Q |
| |
|
|||| |||||||||||| ||| |||| |||||| || |||||||||||||| | ||||||||||| |||||||||| || || ||| |||||| |
|
|
| T |
50292 |
ccatagtttgacagcaggattgttgatctgcttctcctcagcatcatccagcacaacttgaagagtgagaagtgttgttttcagctgcctcaagagtgag |
50391 |
T |
|
| Q |
118 |
gaattcagcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagagaaaagcccctcc |
212 |
Q |
| |
|
||| ||||| |||||| ||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| |||| ||||||||| ||||| |
|
|
| T |
50392 |
acattgagcttagtgtttttgatgtaatcaagaaactctgttgaagcaagtttctcaactaaggtctgaacagttgcagtgagaaaagctcctcc |
50486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 126 - 212
Target Start/End: Original strand, 44958273 - 44958359
Alignment:
| Q |
126 |
cttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagagaaaagcccctcc |
212 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| ||||||||||||||||||||| || |||||||| ||||| |||||||| ||||| |
|
|
| T |
44958273 |
cttggtgtttttgatgtaatcaagaaactctgttgaagcaagtttctcaactaaggtttgaacagttgcagatagaaaagctcctcc |
44958359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 44958196 - 44958264
Alignment:
| Q |
18 |
ccattgtttgacagcagtgttggtgatttgcttcagttctgcatcatccagcaccgcctgaagagtgag |
86 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| ||||||||||| ||||| ||||||||||||| |
|
|
| T |
44958196 |
ccattgtttgacagtaaggttggtgatttgcttctcctctgcatcatcaagcacaacctgaagagtgag |
44958264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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