View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8028_low_4 (Length: 414)
Name: NF8028_low_4
Description: NF8028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8028_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 287
Target Start/End: Original strand, 4365777 - 4366051
Alignment:
| Q |
13 |
aatattgttccaagaatttatgaaaaatcacacactgaacatgttttatgcagtagttttcatgctttctctagttcatctaaataagtatctttctttc |
112 |
Q |
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| T |
4365777 |
aatattgttccaagaatttatgaaaaatcacacactgaacatgttttgtgcagtagttttcaggctttctctagttcatctaaacaagtatctttctttc |
4365876 |
T |
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| Q |
113 |
tttttaagcatgtacaaagttcatatccggaaccaaacttcaagttcatctccgtaatgatttatttcagttataaactaactcatacccatcaaactca |
212 |
Q |
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| T |
4365877 |
tttttaagcatgtacaaagttcatatccggaaccaaacttcaagttcatatccgtaatgatttatttcagttataaactaactcatacccatcaaactca |
4365976 |
T |
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| Q |
213 |
attaaaaacaacatgcaaactaattatcattttgtatgcaataaaaatcagctcacaacaacaaacattcaatca |
287 |
Q |
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| T |
4365977 |
attaaaaacaacatgcaaactaattatcattttgtatgcaacaaaaatcatctcataacaacaaacattcaatca |
4366051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 396
Target Start/End: Original strand, 4366050 - 4366090
Alignment:
| Q |
356 |
caccctatagatgttttagggaagggattctatgttacctt |
396 |
Q |
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| T |
4366050 |
caccctatagatgttttaaggaagggattctatgttacctt |
4366090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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