View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8028_low_5 (Length: 411)
Name: NF8028_low_5
Description: NF8028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8028_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 4 - 394
Target Start/End: Original strand, 13961851 - 13962242
Alignment:
| Q |
4 |
aatttaaagacttgatactttacgggaaaatgttgggagaaagattccatgttatatggcttgcgtgtgttagagttatttgaaaatcaagaaataatat |
103 |
Q |
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| T |
13961851 |
aatttaaagacttgatacttcacaggaaaatgttgggagaaagattccatgttatatggcttgcgtgcgtcagggttatttgaaaatcaagaaataatat |
13961950 |
T |
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| Q |
104 |
gaccttttcacacgggatataagattgacttggcggttggggcatgagagttaataagtatagtgatgaagttggtctcgagttcaattcccacctatag |
203 |
Q |
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| T |
13961951 |
gaccttttcacacgggatataagattgacttggcggttggggcatgagagttaataagtagagtgatgaagttggtctcgagttcaattctcacctatag |
13962050 |
T |
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| Q |
204 |
taaaaatacttacaaataaagtaattaacatatagacattagttgtttaaaaaattac-aaagtctttcaactggaggaaagtaacgtgtacaatattct |
302 |
Q |
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| T |
13962051 |
taaaaatacttacaaataaagtaattaacatatagacattagttgtttaaaaaattacaaaagtctttccactggaggaaagtaacgtgtacagtattct |
13962150 |
T |
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| Q |
303 |
ttatatggtgaaatatttctcatggtttcgttatactgcagctagttgaaaacagcaactgttctagattgagcaaggaagttgctcagaag |
394 |
Q |
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| T |
13962151 |
ttatatggtgaaatatttctcatggttttgttatactgcagctagttgaaaacagcaactgttctagattgagcaaggaagttgctcagaag |
13962242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 338 - 394
Target Start/End: Complemental strand, 13810090 - 13810034
Alignment:
| Q |
338 |
ctgcagctagttgaaaacagcaactgttctagattgagcaaggaagttgctcagaag |
394 |
Q |
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| T |
13810090 |
ctgcagctagttgaaaacagcaactgttctagattgagcatggaagtttctaagaag |
13810034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 318
Target Start/End: Complemental strand, 38892555 - 38892517
Alignment:
| Q |
280 |
gaaagtaacgtgtacaatattctttatatggtgaaatat |
318 |
Q |
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| T |
38892555 |
gaaagtaacctgtacaatattctttatatggtgaaatat |
38892517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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