View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8028_low_8 (Length: 249)
Name: NF8028_low_8
Description: NF8028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8028_low_8 |
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| [»] chr7 (14 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 10498173 - 10497934
Alignment:
| Q |
10 |
cagagaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactacggatt |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10498173 |
cagaggaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactatggatt |
10498074 |
T |
|
| Q |
110 |
ttagacgagctgcacctatttaggtaggaggtcatggccacacttatatttggtcctaataatgtttgcacacatagtattcgttatattacaaagttac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10498073 |
ttagacgagctgcacctatttaggtaggaggtcatggccacacttatatttggtcctaataatgtttgcacacatagtattcgttatattacaaagttac |
10497974 |
T |
|
| Q |
210 |
caactatccttcatgaaaggtatctttattcatgaatatc |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
10497973 |
caactatccttcatgaaaggtatctttattcatgaatatc |
10497934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 10503202 - 10502963
Alignment:
| Q |
10 |
cagagaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactacggatt |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10503202 |
cagaggaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactatggatt |
10503103 |
T |
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| Q |
110 |
ttagacgagctgcacctatttaggtaggaggtcatggccacacttatatttggtcctaataatgtttgcacacatagtattcgttatattacaaagttac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10503102 |
ttagacgagctgcacctatttaggtaggaggtcatggccacacttatatttggtcctaataatgtttgcacacatagtattcgttatattacaaagttac |
10503003 |
T |
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| Q |
210 |
caactatccttcatgaaaggtatctttattcatgaatatc |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
10503002 |
caactatccttcatgaaaggtatctttattcatgaatatc |
10502963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 125 - 241
Target Start/End: Complemental strand, 13336360 - 13336244
Alignment:
| Q |
125 |
ctatttaggtaggaggtcatggccacacttatatttggtcctaataatgtttgcacacatagtattcgttatattacaaagttaccaactatccttcatg |
224 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13336360 |
ctatttaggaaggaggtcatggccacagttatatttggtcctaataatgtttgcacacatagtattcgttatattacaaagttaccaactatccttcatg |
13336261 |
T |
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| Q |
225 |
aaaggtatctttattca |
241 |
Q |
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||||||||||||||||| |
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| T |
13336260 |
aaaggtatctttattca |
13336244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 13336789 - 13336699
Alignment:
| Q |
13 |
agaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaacta |
103 |
Q |
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|||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13336789 |
agaaggaatttaggagtcccagatagtttagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaacta |
13336699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 10532969 - 10532879
Alignment:
| Q |
13 |
agaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaacta |
103 |
Q |
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|||||||||||| || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10532969 |
agaaggaatttatgaaccccaggaagtttagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaacta |
10532879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 10532593 - 10532680
Alignment:
| Q |
13 |
agaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaa |
100 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||| |
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| T |
10532593 |
agaaggaatttaggagccccaggaagtttagactgaacatgtcctcaaacatcttcttcactctaaccataggtggagctcgcctaaa |
10532680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 13344683 - 13344568
Alignment:
| Q |
13 |
agaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactacggatttta |
112 |
Q |
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||||||||||| |||| |||| || ||||| | ||||||||||||||||||||||||| |||||||||| ||| ||||||||||||| |||||||| |
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| T |
13344683 |
agaaggaattttggagacccaagaagtttagatttaatatgtcctcaaacatcttcttcattctaaccattaatggagctcgtctaaacttaggatttta |
13344584 |
T |
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| Q |
113 |
gacgagctgcacctat |
128 |
Q |
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||||||||||| |||| |
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| T |
13344583 |
gacgagctgcaactat |
13344568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 10532749 - 10532661
Alignment:
| Q |
40 |
ttagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactacggattttagacgagctgcacctat |
128 |
Q |
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|||||||||| |||||||||||||||| | |||||||||||||||| |||||||||||||||| | ||||||| |||||| ||||||| |
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| T |
10532749 |
ttagactgaacgtgtcctcaaacatcttatacactctaaccattggtagggctcgtctaaactaagaattttaggcgagctccacctat |
10532661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 10500066 - 10500157
Alignment:
| Q |
10 |
cagagaaggaatttaggagcccc-agaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaa |
100 |
Q |
| |
|
|||||||||| ||||||| |||| ||||| |||||||||| ||||||||||||||||||| |||||||||||| ||||| ||||||||||| |
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| T |
10500066 |
cagagaaggagtttaggatcccccagaaagtttagactgaacatgtcctcaaacatcttctccactctaaccataggtggagctcgtctaaa |
10500157 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 10505095 - 10505186
Alignment:
| Q |
10 |
cagagaaggaatttaggagcccc-agaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaa |
100 |
Q |
| |
|
|||||||||| ||||||| |||| ||||| |||||||||| ||||||||||||||||||| |||||||||||| ||||| ||||||||||| |
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| T |
10505095 |
cagagaaggagtttaggatcccccagaaagtttagactgaacatgtcctcaaacatcttctccactctaaccataggtggagctcgtctaaa |
10505186 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 13344449 - 13344331
Alignment:
| Q |
10 |
cagagaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactacggatt |
109 |
Q |
| |
|
|||||||| |||| |||| ||||| || |||||||||| |||||||||||||||| | |||||||||||||||| |||||||||||||||| ||| |
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| T |
13344449 |
cagagaagtaattgaggaaccccatgaagtttagactgaacctgtcctcaaacatcttatacactctaaccattggtagggctcgtctaaactaattatt |
13344350 |
T |
|
| Q |
110 |
ttagacgagctgcacctat |
128 |
Q |
| |
|
|||| |||||| ||||||| |
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| T |
13344349 |
ttaggcgagctccacctat |
13344331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 10500255 - 10500138
Alignment:
| Q |
11 |
agagaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactacggattt |
110 |
Q |
| |
|
||||||| |||| |||||||||| || |||||| ||| |||| ||||||||| | | |||||||||||||||| | |||||||||||||| |||||| |
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| T |
10500255 |
agagaagtaattgaggagccccatgaagtttagaccgaacgtgtcgtcaaacatcatatacactctaaccattggtagagctcgtctaaactaaggattt |
10500156 |
T |
|
| Q |
111 |
tagacgagctgcacctat |
128 |
Q |
| |
|
|||||||||| ||||||| |
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| T |
10500155 |
tagacgagctccacctat |
10500138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 10505284 - 10505167
Alignment:
| Q |
11 |
agagaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactacggattt |
110 |
Q |
| |
|
||||||| |||| |||||||||| || |||||| ||| |||| ||||||||| | | |||||||||||||||| | |||||||||||||| |||||| |
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| T |
10505284 |
agagaagtaattgaggagccccatgaagtttagaccgaacgtgtcgtcaaacatcatatacactctaaccattggtagagctcgtctaaactaaggattt |
10505185 |
T |
|
| Q |
111 |
tagacgagctgcacctat |
128 |
Q |
| |
|
|||||||||| ||||||| |
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|
| T |
10505184 |
tagacgagctccacctat |
10505167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 13344503 - 13344587
Alignment:
| Q |
16 |
aggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaa |
100 |
Q |
| |
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||||||||| ||||||||| || |||||||||| |||||||||| ||||||| |||||||||||| | || ||||||||||| |
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| T |
13344503 |
aggaatttatgagccccaggaagtttagactgaacgtgtcctcaaatatcttctccactctaaccatagttgcagctcgtctaaa |
13344587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 35457110 - 35456989
Alignment:
| Q |
10 |
cagagaaggaatttaggagcc-ccagaaacattagactgaatatgtcctcaaacatcttcttcactcta----accattggtggggctcgtctaaactac |
104 |
Q |
| |
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|||| |||||||| ||||||| |||| || ||||||||||||| ||||||||||||||| ||||||| |||||||||| ||||||||||||||| |
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| T |
35457110 |
cagaaaaggaattgaggagcctccaggaagtttagactgaatat--cctcaaacatcttctccactctatataaccattggtgtggctcgtctaaactaa |
35457013 |
T |
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| Q |
105 |
ggattttagacgagctgcacctat |
128 |
Q |
| |
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||||||||||||| || ||||||| |
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| T |
35457012 |
ggattttagacgatctccacctat |
35456989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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