View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8029_high_15 (Length: 262)
Name: NF8029_high_15
Description: NF8029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8029_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 40632357 - 40632108
Alignment:
| Q |
1 |
aagaaaagtgaatgagttatgcagaaccaaggtaggatcttgagatagatcttgtatgattgttgttccagcctcatcatccttggctccttcctgctcc |
100 |
Q |
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| T |
40632357 |
aagaaaagtgaatgagttatgcagaaccaaggtaggatcttgagatagatcttgtatgatttttgttccagcctcatcatccttggctccttcctgctcc |
40632258 |
T |
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| Q |
101 |
aagttcactatcacaatatcagtttccagcctctcaacatttgaatcatttttgtgagttgtatcaatttcaagctgcgcattttgaggtgttttagtgg |
200 |
Q |
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| T |
40632257 |
aagttcactatcacattatcagtttccagcctctcaacatttgaatcatttttgtgagttgtatcaatttcaagctgcgcattttgaggtgttttagtgg |
40632158 |
T |
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| Q |
201 |
ggtaaaattgcttgtcggtcaagttatttctaatgttcttcttagtgatg |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40632157 |
ggtaaaattgcttgtcggtcaagttatttctaatgttcttcttagtgatg |
40632108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 50904245 - 50904277
Alignment:
| Q |
49 |
atcttgtatgattgttgttccagcctcatcatc |
81 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
50904245 |
atcttgtatgattgttgttacagcctcatcatc |
50904277 |
T |
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