View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8029_high_2 (Length: 585)
Name: NF8029_high_2
Description: NF8029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8029_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 9e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 265 - 460
Target Start/End: Original strand, 13557550 - 13557745
Alignment:
| Q |
265 |
ttatattgcagctggatgggaaaatagttgcacctgctaagggagcattgaaggataagtcatattggattaggatccaatatataaaccatctcacaat |
364 |
Q |
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| T |
13557550 |
ttattttgcagctggatgggaaaatagttgcacctgctaagggagcattgaaggataagtcatattggattaggatccaatatataaaccatctcacaat |
13557649 |
T |
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| Q |
365 |
agatggtggaataggtggatcaattgatggttatggttctacttggtggcaatgcaaatcttgctttcgacctacggtatgattattcctttttta |
460 |
Q |
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| T |
13557650 |
agatggtggaataggtggatcaattgagggctatggctctacttggtggcagtgcaaaacttgctctcgacctacggtatgattattcctttttta |
13557745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 7593142 - 7593189
Alignment:
| Q |
19 |
tgtgcatttatat-atatatttactacaaacctatagtaattaacatt |
65 |
Q |
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| T |
7593142 |
tgtgcatttatatcatatatttacttcaaaactatagtaattaacatt |
7593189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 8019962 - 8020022
Alignment:
| Q |
15 |
aatatgtgcatttatat-atatatttactacaaacctatagtaattaacattgtcatttat |
74 |
Q |
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| T |
8019962 |
aatatgtgcatttatatcatgtatttacatcaaaactatagtaatgaacattgccatttat |
8020022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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