View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8029_high_3 (Length: 474)
Name: NF8029_high_3
Description: NF8029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8029_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 197 - 452
Target Start/End: Original strand, 7786882 - 7787138
Alignment:
| Q |
197 |
ctaatatatttatactacaagttcgatttgatcgggttcaatccaaacaaaagcaacaatcaacaaactttattcaacaaagtgggttagctatagatca |
296 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7786882 |
ctaatatatttatactacaagttcagtttgatcgggttcaatccaaacaaaagcaacaatcaacaaactttattcaacaaagtgggttagctatagatca |
7786981 |
T |
|
| Q |
297 |
aacgatgtcttaatgttttattatatatcatatttttatccaattaattattcttaaaatctttttgaagagttcctttat-aattttctagatcttcat |
395 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||| ||||||||||| ||||||||||||||| || |
|
|
| T |
7786982 |
aacgacgtcttaatgttttattatatatcatatttctatccaattcattattcttgaaatctttttgaatagttcctttataaattttctagatcttgat |
7787081 |
T |
|
| Q |
396 |
tgaccctggtgatttgactattcttcatttgatatacacccttactacaaaatctaa |
452 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7787082 |
tgaccctaatgatttgactattcttcatttgatatacacccttactacaaaatctaa |
7787138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 7786317 - 7786469
Alignment:
| Q |
18 |
aagtagatcatagcacaggtcgtttgtgagtgagtaattatatgtttgcaataattatcgaatataaggacattttaagtgtgtttgaaattctttcttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7786317 |
aagtagatcatagcacaggtcgtttgtgagtgagtaattatatgtttgcaataattatcgaatataaggacattttaagtgtgtttgaaattctttcttc |
7786416 |
T |
|
| Q |
118 |
taaaaaagaaaagcgtgtgtatttgaaattatgtaagtttaaagaattgtaggg |
171 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
7786417 |
taaaaaagaaaagcgtgtgtgtttgaaattatgtaagttt-aagaattgtaggg |
7786469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University