View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8029_high_5 (Length: 461)
Name: NF8029_high_5
Description: NF8029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8029_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 59 - 442
Target Start/End: Complemental strand, 40941153 - 40940765
Alignment:
| Q |
59 |
agtataataaagactatatgctagaatggctatgatgat--tatatttatacatatagaacactctacctctgaaagttgtttctcagtcatttcaacac |
156 |
Q |
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|||| ||||||||||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40941153 |
agtaaaataaagactatatgatagaatggctacgatgatcatatatttatacatatataacactctacctctgaaagttgtttctcagtcatttcaacac |
40941054 |
T |
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| Q |
157 |
cttccagaagtgtcttcaggagtttcactgcttcagcggag---tcacttgacgtatcaattttggaaaaactttcttttacaactgatgaagctcttcc |
253 |
Q |
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| T |
40941053 |
cttccagaagtgtcttcaggagtttcaccgcttcagcggaggagtcacttgacgtatcaattttggaaaaactttcttttacaactgatgaagctcttcc |
40940954 |
T |
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| Q |
254 |
caaattatccgcaacatcaagtaaactctttgcaaaattctacagcacatttaaataaatcagcnnnnnnnttatgagtaagttatttgggacaaaaatg |
353 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40940953 |
caaattatccgcaacatcaagtaaactctttgcgaaattctacagcacatttaaataaatcagcaaaaaaattatgagtaagttatttgggacaaaaatg |
40940854 |
T |
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| Q |
354 |
ttcaaactttgacctgtatagcaaatttcgtttaattctctgcttcacgtctagtcctgtccatgacattctccatttcagagtaagta |
442 |
Q |
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| T |
40940853 |
ttcaaattttgacctgtatagcgaatttccttgaattctctgcttcacgtctagtcctgtccatgacattctccatttcagcgtaagta |
40940765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 40941402 - 40941362
Alignment:
| Q |
2 |
ctccaatatgtttataagttataaaatgaaattggcttttg |
42 |
Q |
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| T |
40941402 |
ctccaatatgtttgtaagttttaaaatgaaattggcttttg |
40941362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 112 - 297
Target Start/End: Complemental strand, 21505305 - 21505120
Alignment:
| Q |
112 |
tagaacactctacctctgaaagttgtttctcagtcatttcaacaccttccagaagtgtcttcaggagtttcactgcttcagcggagtcacttgacgtatc |
211 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| | | || || | | | || |
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| T |
21505305 |
tagaacagtctacctctgcaagttgtttctcagtcatttcaacaccttccagaagtgttttcaggagtggtgcggcttgatcagattctttaggtgattc |
21505206 |
T |
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| Q |
212 |
aattttggaaaaactttcttttacaactgatgaagctcttcccaaattatccgcaacatcaagtaaactctttgcaaaattctaca |
297 |
Q |
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|||||| |||||||| || ||||||||||| ||||||||||||||||| || |||||||||||||||||||| |||||| |||||| |
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| T |
21505205 |
aatttttgaaaaactgtcctttacaactgaagaagctcttcccaaattgtcagcaacatcaagtaaactcttggcaaaactctaca |
21505120 |
T |
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