View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8029_high_6 (Length: 416)
Name: NF8029_high_6
Description: NF8029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8029_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 19243438 - 19243132
Alignment:
| Q |
14 |
atatcgat-aatttaaatggagaggatcttaaccgaacatccaaagcacctagatgagcacaagcagaattactcacaaatatagactcatcaggtacta |
112 |
Q |
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| T |
19243438 |
atatcgatgaatttaaatggagagaatcttaacccaacatccaaagcacctagatgagcacaagcagaattactcacaaatatagactcatcaggtacta |
19243339 |
T |
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| Q |
113 |
tatcagtcaac---------------aaataaagactttccttaaagcaactattttgcacataaccagaaaccattgcacctcatattcctttatcctt |
197 |
Q |
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| T |
19243338 |
tatcagtcaactgcatcaaacgaaacaaataaagactttccttaaagcaactattttgcacataaccagaaaccattgcaccccatattcctttatcctt |
19243239 |
T |
|
| Q |
198 |
ctcaggcgcttcatcgaagaacaatttagccgaatcaacatcacccactttcgtatattcagaaatcatcacactccaagaaactgcacttaagctagga |
297 |
Q |
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| T |
19243238 |
ctcaggcgcttcatcgaagaacaatttagccgaatcaacatcacccactttcgtatattcagaaatcatcacactccaagaaactgcacttaagttagga |
19243139 |
T |
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| Q |
298 |
atttcat |
304 |
Q |
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||||||| |
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| T |
19243138 |
atttcat |
19243132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 52 - 304
Target Start/End: Complemental strand, 19240371 - 19240101
Alignment:
| Q |
52 |
tccaaagcacctagatgagcacaagcaga---attactcacaaatatagactcatcaggtactatatcagtcaac---------------aaataaagac |
133 |
Q |
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| T |
19240371 |
tccaaagcacctagatgagcacaagcagagagaatactcacaaatatagactcatccggtactatatcagtcaactgcatcaaacgaaacaaataaagac |
19240272 |
T |
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| Q |
134 |
tttccttaaagcaactattttgcacataaccagaaaccattgcacctcatattcctttatccttctcaggcgcttcatcgaagaacaatttagccgaatc |
233 |
Q |
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| T |
19240271 |
tttccttaaagcaactattttgcacataaccagaaatcattgcaccccatatccccttatccttctcaggcgcttcatcgaagaacaatctagccgaatc |
19240172 |
T |
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| Q |
234 |
aacatcacccactttcgtatattcagaaatcatcacactccaagaaactgcacttaagctaggaatttcat |
304 |
Q |
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| T |
19240171 |
aacatcacccactttcgcataacccgagatcatcacactccaagaaaccacatttaagctaggaatttcat |
19240101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 398
Target Start/End: Complemental strand, 19243083 - 19243038
Alignment:
| Q |
353 |
gagtataattaaggtccaaacataaaattgtgtttaaggtttattc |
398 |
Q |
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| T |
19243083 |
gagtataattaaggtccaaacataaaattgtgtttaaggcttattc |
19243038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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