View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8029_low_1 (Length: 696)

Name: NF8029_low_1
Description: NF8029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8029_low_1
NF8029_low_1
[»] chr2 (5 HSPs)
chr2 (306-681)||(16375098-16375468)
chr2 (15-256)||(16374858-16375099)
chr2 (15-164)||(30614713-30614863)
chr2 (15-153)||(18370599-18370738)
chr2 (109-153)||(16594356-16594400)
[»] chr3 (3 HSPs)
chr3 (18-160)||(8362994-8363137)
chr3 (18-161)||(17521898-17522042)
chr3 (95-153)||(17350303-17350360)
[»] chr7 (1 HSPs)
chr7 (15-150)||(11454265-11454401)
[»] chr1 (9 HSPs)
chr1 (18-150)||(18645395-18645528)
chr1 (39-164)||(42377470-42377594)
chr1 (605-681)||(47569331-47569407)
chr1 (605-681)||(6326536-6326612)
chr1 (605-679)||(24621574-24621648)
chr1 (605-681)||(28231704-28231780)
chr1 (605-681)||(28326529-28326605)
chr1 (635-666)||(28239427-28239458)
chr1 (605-679)||(23787227-23787301)
[»] chr5 (1 HSPs)
chr5 (605-681)||(2657516-2657592)
[»] chr8 (1 HSPs)
chr8 (616-677)||(27823889-27823949)
[»] chr4 (1 HSPs)
chr4 (619-659)||(8331914-8331954)


Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 306 - 681
Target Start/End: Original strand, 16375098 - 16375468
Alignment:
Q  306 gtgctataacaaccttagattctagcaatgggctactgcattgcccataactcaccctctcagtccttgcatgacgtgctgactccttatacgacagaat 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16375098 gtgctataacaaccttagattctagcaatgggctactgcattgcccataactcaccctctcagtccttgcatgacgtgctgactccttatacgacagaat 16375197  T
Q  406 aattgtccaaatagtgaaagattattacatgtacatgtttcattaatgttcttggtgcaattcagctggatcaattataatttttaacttttgaatacaa 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16375198 aattgtccaaatagtgaaagattattacatgtacatgtttcattaatgttcttggtgcaattcagctggatcaattataatttttaacttttgaatacaa 16375297  T
Q  506 gatggaaaccaacagagac-aaacaagcaagccaccccataatggaccacaaaa-cagagatcaatacaagatggactataactcaatcatatctaggca 603  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||           
T  16375298 gatggaaaccaacagagacaaaacaagcaagccaccccataatggaccacaaaatcagagatcaatacaagatggactataactcaatcatat------- 16375390  T
Q  604 cagaggtaaaatctactaaaagtgcagcacatgtgatgataaaaggtggtgtcaaacctaatgcttctagttatcact 681  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16375391 cagaggtaaaatctaataaaagtgcagcacatgtgatgataaaaggtggtgtcaaacctaatgcttctagttatcact 16375468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 256
Target Start/End: Original strand, 16374858 - 16375099
Alignment:
Q  15 atgaaacttgacatacaaaacactttgaaaaaccctaaaaacatagattgctaggtgctttaacatgcactaaacattataaagaaacaataaatatcat 114  Q
    ||||||||| ||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16374858 atgaaacttaacacacaagacactttgaagaaccctaaaaacatagattgctaggtgctttaacatgcactaaacattataaagaaacaataaatatcat 16374957  T
Q  115 caaattatctaacatcctaatcaaacatcatcaaaacaagaactatactagggtatggacaaatttcatcagagacatactagtatagtaagtacaaatt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  16374958 caaattatctaacatcctaatcaaacatcatcaaaacaagaactatactagggtatggacaaatttcctcatagacatactagtatagtaagtacaaatt 16375057  T
Q  215 taatgatatccaatcaactgactgagatcagccacacattgt 256  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  16375058 taatgatatccaatcaactgactgagatcagccacaccttgt 16375099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 30614863 - 30614713
Alignment:
Q  15 atgaaacttgacatacaaaacactttgaaaaaccctaaaaacatagattgctaggtgctttaacatgcactaaacattataaa-gaaacaataaatatca 113  Q
    ||||||||||||| |||||||||||  || |||| ||| | |||  |||||||||||||||||||||   |||||||  |||| | ||| ||||| ||||    
T  30614863 atgaaacttgacacacaaaacacttcaaagaaccgtaagagcatgtattgctaggtgctttaacatgtgttaaacatcgtaaaaggaaccataaacatca 30614764  T
Q  114 tcaaattatctaacatcctaatcaaacatcatcaaaacaagaactatacta 164  Q
    |||||||||||| |||||||||||||||| | | |||||||||||||||||    
T  30614763 tcaaattatctagcatcctaatcaaacattagcgaaacaagaactatacta 30614713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 18370738 - 18370599
Alignment:
Q  15 atgaaacttgacatacaaaacactttgaaaaaccctaaaaacatagattgctaggtgctttaacatgcactaaacattataaaga-aacaataaatatca 113  Q
    ||||||||||| | |||  |||||||||| |||||||||| ||| |||||||||||||||||||||    ||| ||| ||||||| ||||||||| ||||    
T  18370738 atgaaacttgaaacacacgacactttgaagaaccctaaaatcatggattgctaggtgctttaacatatggtaatcatcataaagagaacaataaacatca 18370639  T
Q  114 tcaaattatctaacatcctaatcaaacatcatcaaaacaa 153  Q
    ||||  || ||| || ||||||||||||||||||| ||||    
T  18370638 tcaatatacctagcaacctaatcaaacatcatcaatacaa 18370599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 16594356 - 16594400
Alignment:
Q  109 tatcatcaaattatctaacatcctaatcaaacatcatcaaaacaa 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  16594356 tatcatcaaattatctaacatcctaatcaaacatcatcaaaacaa 16594400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 5e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 8363137 - 8362994
Alignment:
Q  18 aaacttgacatacaaaacactttgaaaaaccctaaaaacatagattgctaggtgctttaacatgcactaaacattataaa-gaaacaataaatatcatca 116  Q
    |||||||||| |||| |||||||||  |||||||| |  || ||||||||||||||||||||||   |||| |||||||| ||||||||||| |||| ||    
T  8363137 aaacttgacacacaagacactttgaggaaccctaagagtatggattgctaggtgctttaacatgtgataaatattataaaagaaacaataaacatcacca 8363038  T
Q  117 aattatctaacatcctaatcaaacatcatcaaaacaagaactat 160  Q
    ||||||||| |||| ||||||||||||||||||| |||||||||    
T  8363037 aattatctagcatcgtaatcaaacatcatcaaaataagaactat 8362994  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 17522042 - 17521898
Alignment:
Q  18 aaacttgacatacaaaacactttgaaaaaccctaaaaacatagattgctaggtgctttaacatgcactaaacattata-aagaaacaataaatatcatca 116  Q
    |||||||||| |||| ||||||||| ||||||||| | ||| |||||||| ||  |||||||||  ||||||| |||| ||||||||||| | |||||||    
T  17522042 aaacttgacacacaagacactttgagaaaccctaagatcatggattgctaagtcttttaacatgtgctaaacaatatagaagaaacaatagacatcatca 17521943  T
Q  117 aattatctaacatcctaatcaaacatcatcaaaacaagaactata 161  Q
    | |||||||||| || ||||||||||||| ||||||||| |||||    
T  17521942 atttatctaacaacccaatcaaacatcataaaaacaagagctata 17521898  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 17350303 - 17350360
Alignment:
Q  95 aaagaaacaataaatatcatcaaattatctaacatcctaatcaaacatcatcaaaacaa 153  Q
    |||| ||||||||| ||||||||| |||||| || ||||||||||||||||||||||||    
T  17350303 aaaggaacaataaa-atcatcaaaatatctagcagcctaatcaaacatcatcaaaacaa 17350360  T

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Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 11454401 - 11454265
Alignment:
Q  15 atgaaacttgacatacaaaacactttgaaaaaccctaaaaacatagattgctaggtgctttaacatgcactaaacattataaa-gaaacaataaatatca 113  Q
    ||||||||||||| ||||||||||||||| |||||||| || || ||||||||||| || ||| ||   ||||| |||||||| | ||||||||| ||||    
T  11454401 atgaaacttgacacacaaaacactttgaagaaccctaagaatatggattgctaggtactataaaatatgctaaatattataaaaggaacaataaacatca 11454302  T
Q  114 tcaaattatctaacatcctaatcaaacatcatcaaaa 150  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  11454301 tcaaattatctagcatcctaatcaaacatcataaaaa 11454265  T

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Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 18645395 - 18645528
Alignment:
Q  18 aaacttgacatacaaaacactttgaaaaaccctaaaaacatagattgctaggtgctttaacatgcactaaacattataaa-gaaacaataaatatcatca 116  Q
    |||||||||| |||| ||||||||||  ||||||| | ||| | ||||||| |||||||| | |  |||||||||||||| ||||||||||| |||||||    
T  18645395 aaacttgacacacaagacactttgaaggaccctaagagcatgggttgctagatgctttaagaagtgctaaacattataaaagaaacaataaacatcatca 18645494  T
Q  117 aattatctaacatcctaatcaaacatcatcaaaa 150  Q
    ||||||||| ||||||| ||||||||||||||||    
T  18645495 aattatctagcatcctactcaaacatcatcaaaa 18645528  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 39 - 164
Target Start/End: Complemental strand, 42377594 - 42377470
Alignment:
Q  39 ttgaaaaaccctaaaaacatagattgctaggtgctttaacatgcactaaacattataaagaaa-caataaatatcatcaaattatctaacatcctaatca 137  Q
    ||||| |||||||| | ||||||||||||||||||||| ||||  |||| |||||||||   | ||||||| |||||||||||||||| |||||||||||    
T  42377594 ttgaagaaccctaagagcatagattgctaggtgcttta-catgtgctaa-cattataaaatgagcaataaacatcatcaaattatctagcatcctaatca 42377497  T
Q  138 aacatcatcaaaacaagaactatacta 164  Q
    ||||| |||||||||| ||||| ||||    
T  42377496 aacattatcaaaacaaaaactaaacta 42377470  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 605 - 681
Target Start/End: Original strand, 47569331 - 47569407
Alignment:
Q  605 agaggtaaaatctactaaaagtgcagcacatgtgatgataaaaggtggtgtcaaacctaatgcttctagttatcact 681  Q
    |||||| |||||| ||||| |||||||   | |||||||||||||| ||||||||||||||||| ||||||||||||    
T  47569331 agaggtgaaatctgctaaatgtgcagctgctttgatgataaaaggtagtgtcaaacctaatgctgctagttatcact 47569407  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 605 - 681
Target Start/End: Complemental strand, 6326612 - 6326536
Alignment:
Q  605 agaggtaaaatctactaaaagtgcagcacatgtgatgataaaaggtggtgtcaaacctaatgcttctagttatcact 681  Q
    |||||| |||||| |||||| ||||| |  ||||||||||||||| ||| |||||||||||| | ||||||||||||    
T  6326612 agaggtcaaatctgctaaaactgcagtagctgtgatgataaaaggcggtctcaaacctaatgttgctagttatcact 6326536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 605 - 679
Target Start/End: Complemental strand, 24621648 - 24621574
Alignment:
Q  605 agaggtaaaatctactaaaagtgcagcacatgtgatgataaaaggtggtgtcaaacctaatgcttctagttatca 679  Q
    |||||| ||||||  |||||||||||||  | |||||||||||| ||||||||||||||||| | || |||||||    
T  24621648 agaggtgaaatctgttaaaagtgcagcaactttgatgataaaagctggtgtcaaacctaatgttgcttgttatca 24621574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 681
Target Start/End: Original strand, 28231704 - 28231780
Alignment:
Q  605 agaggtaaaatctactaaaagtgcagcacatgtgatgataaaaggtggtgtcaaacctaatgcttctagttatcact 681  Q
    |||||| | |||| ||||||||| ||||  | |||||||||||||||||||||||||||| | | ||||||| ||||    
T  28231704 agaggtgagatctgctaaaagtgtagcagctatgatgataaaaggtggtgtcaaacctaacgttgctagttaccact 28231780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 681
Target Start/End: Original strand, 28326529 - 28326605
Alignment:
Q  605 agaggtaaaatctactaaaagtgcagcacatgtgatgataaaaggtggtgtcaaacctaatgcttctagttatcact 681  Q
    |||||| |||||| ||||||||| || |  ||| ||||||||||||||| ||| |||||||| | ||||||||||||    
T  28326529 agaggtgaaatctgctaaaagtgtagtagctgtcatgataaaaggtggtctcagacctaatgttgctagttatcact 28326605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 666
Target Start/End: Original strand, 28239427 - 28239458
Alignment:
Q  635 tgtgatgataaaaggtggtgtcaaacctaatg 666  Q
    ||||||||||||||||||||||||||||||||    
T  28239427 tgtgatgataaaaggtggtgtcaaacctaatg 28239458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 605 - 679
Target Start/End: Original strand, 23787227 - 23787301
Alignment:
Q  605 agaggtaaaatctactaaaagtgcagcacatgtgatgataaaaggtggtgtcaaacctaatgcttctagttatca 679  Q
    |||||| ||||||  |||||||||||||  | || ||||||||| ||||||||||||||||| | || |||||||    
T  23787227 agaggtgaaatctgttaaaagtgcagcaactttggtgataaaagctggtgtcaaacctaatgttgcttgttatca 23787301  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 605 - 681
Target Start/End: Complemental strand, 2657592 - 2657516
Alignment:
Q  605 agaggtaaaatctactaaaagtgcagcacatgtgatgataaaaggtggtgtcaaacctaatgcttctagttatcact 681  Q
    |||||| |||||||||||||| ||||||  ||||||||||| || |  |||||||||||||| | ||||||||||||    
T  2657592 agaggtgaaatctactaaaagagcagcaactgtgatgataagagataatgtcaaacctaatgatgctagttatcact 2657516  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 616 - 677
Target Start/End: Original strand, 27823889 - 27823949
Alignment:
Q  616 ctactaaaagtgcagcacatgtgatgataaaaggtggtgtcaaacctaatgcttctagttat 677  Q
    |||||||||||||||||  |||||| |||||| |||||||||||||||||| | ||||||||    
T  27823889 ctactaaaagtgcagcaattgtgatcataaaa-gtggtgtcaaacctaatgttgctagttat 27823949  T

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Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 659
Target Start/End: Original strand, 8331914 - 8331954
Alignment:
Q  619 ctaaaagtgcagcacatgtgatgataaaaggtggtgtcaaa 659  Q
    ||||||||||| ||  |||||||||||||||||||||||||    
T  8331914 ctaaaagtgcaacaattgtgatgataaaaggtggtgtcaaa 8331954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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