View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8029_low_10 (Length: 326)
Name: NF8029_low_10
Description: NF8029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8029_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 4783063 - 4782747
Alignment:
| Q |
1 |
aggaaaagagattagagttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtgtttgttgaggagccacaactgatggctaaactgta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4783063 |
aggaaaagagattagagttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtgtttgttgaggagccacaactgatggctaaactgta |
4782964 |
T |
|
| Q |
101 |
atcagggttgtatgaactagcaattagaggaaataataggtgaaggaaaaggaagtgtagaagggtggtgttacattgaaatttgtggtttctggagttt |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4782963 |
atcagggttgtatgaaatagcaattagaggaaataataggtgaaggaaaaggaagtgtagaagggtggtgttacattgaaatttgtggtttctggagttt |
4782864 |
T |
|
| Q |
201 |
gccatatttgtgtgtaaagcttgttgttgttagagaagaatgtgaagagtagannnnnnnnncttcttgtgatgacttttgagacactacagattgcatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4782863 |
gccatatttgtgtgtaaagcttgttgttgttagagaagaatgtgaagagtagatttttttttcttcttgtgatgacttttgagacactacagattgcatg |
4782764 |
T |
|
| Q |
301 |
tatttattgttatattc |
317 |
Q |
| |
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||||||||||||||||| |
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| T |
4782763 |
tatttattgttatattc |
4782747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 4815492 - 4815180
Alignment:
| Q |
1 |
aggaaaagagattagagttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtgtttgttgaggagccacaactgatggctaaactgta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4815492 |
aggaaaagagattagagttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtgtttgttgaggagccacaactgatggctaaactgta |
4815393 |
T |
|
| Q |
101 |
atcagggttgtatgaactagcaattagaggaaataataggtgaaggaaaaggaagtgtagaagggtggtgttacattgaaatttgtggtttctggagttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4815392 |
atcagggttgtatgaactagcaattagaggaaataataggtgaaggaaaaggaagtgtagaagggtggtgttacattgaaatttgtggtttctggagttt |
4815293 |
T |
|
| Q |
201 |
gccatatttgtgtgtaaagcttgttgttgttagagaagaatgtgaagagtagannnnnnnnncttcttgtgatgacttttgagacactacagattgcatg |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||| |
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| T |
4815292 |
gccatatttgtgtgtaaagcttgttgttgttagagaagaatgtgaagagtagatttatttttcttcctgtgatgacttttgagacactacaaattgcatg |
4815193 |
T |
|
| Q |
301 |
tatttattgttat |
313 |
Q |
| |
|
||||||||||||| |
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|
| T |
4815192 |
tatttattgttat |
4815180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 4711311 - 4711186
Alignment:
| Q |
5 |
aaagagattagagttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtgtttgttgaggagccacaactgatggctaaactgtaatca |
104 |
Q |
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|
||||||||| ||||||||||| |||||| ||||||||||||| | ||| ||||||||||||||||||||| |||||||| ||||||||||| |||||||| |
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| T |
4711311 |
aaagagatttgagttatcaatattatcaccaacccaaattcgactatctaaggcagtagtgtttgttgagaagccacaattgatggctaaattgtaatca |
4711212 |
T |
|
| Q |
105 |
gggttgtatgaactagcaattagagg |
130 |
Q |
| |
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||||||||||| |||||| |||||| |
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| T |
4711211 |
gggttgtatgagttagcaactagagg |
4711186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 4845239 - 4845129
Alignment:
| Q |
5 |
aaagagattagagttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtgtttgttgaggagccacaactgatggctaaactgtaatca |
104 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||| |||||||||| ||| |||||| | ||||||||||||| |||||| ||||||||||| |||||||| |
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| T |
4845239 |
aaagagatttgagttatcaatattatcaccaatccaaattcgtttatctaaggcaacattgtttgttgaggaaccacaattgatggctaaattgtaatca |
4845140 |
T |
|
| Q |
105 |
gggttgtatga |
115 |
Q |
| |
|
||||||||||| |
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|
| T |
4845139 |
gggttgtatga |
4845129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 4637734 - 4637832
Alignment:
| Q |
17 |
gttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtgtttgttgaggagccacaactgatggctaaactgtaatcagggttgtatga |
115 |
Q |
| |
|
||||| ||| |||||| |||||||||||||| ||| ||||||||| ||| ||| ||||||||||| ||||||||||| ||||||||||||||||||| |
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|
| T |
4637734 |
gttattaatattatcaccaacccaaattcgtttatctaaggcagtattgtcggttaaggagccacaattgatggctaaattgtaatcagggttgtatga |
4637832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 4864805 - 4864899
Alignment:
| Q |
17 |
gttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtgtttgttgaggagccacaactgatggctaaactgtaatcagggttgtatg |
114 |
Q |
| |
|
||||||||| |||||| |||||||||||||| ||| |||| |||| ||||||||||||||||||| ||||||||||||| |||||||| |||||| |
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| T |
4864805 |
gttatcaatattatcaccaacccaaattcgtttatctaaggtagta---tttgttgaggagccacaaccgatggctaaactgaaatcagggctgtatg |
4864899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 4644572 - 4644648
Alignment:
| Q |
17 |
gttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtgtttgttgaggagccacaactgatggcta |
93 |
Q |
| |
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||||||| | |||||| ||||||||||||| | ||| |||||||||||||| ||||||||||||||||| ||||||| |
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| T |
4644572 |
gttatcattattatcaccaacccaaattcgactatctaaggcagtagtgttcgttgaggagccacaactaatggcta |
4644648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 4654376 - 4654498
Alignment:
| Q |
17 |
gttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtgtttgttgaggagccacaactgatggctaaactgtaatcagggttgtatgaa |
116 |
Q |
| |
|
||||||||| || ||| ||| |||||||||| ||| |||| |||||||| |||| |||||||||| ||| |||||| ||||||||||||||||||| |
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| T |
4654376 |
gttatcaatattctcaccaatccaaattcgtttatctaaggtagtagtgtctgttagggagccacaatcgatagctaaattgtaatcagggttgtatgag |
4654475 |
T |
|
| Q |
117 |
ctagcaattagaggaaataatag |
139 |
Q |
| |
|
|||||||||||| || ||||| |
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| T |
4654476 |
taagcaattagagggaacaatag |
4654498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 4696409 - 4696274
Alignment:
| Q |
1 |
aggaaaagagattagagttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtgtttgttgaggagccacaactgatggctaaactgta |
100 |
Q |
| |
|
|||||||||| || | ||||||| | |||||| ||||||| |||||| || |||| |||||| || ||||||||||||| ||||||||||| |||| |
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| T |
4696409 |
aggaaaagagttttgtgttatcattattatcaccaacccatattcgtttgtcgaagg---tagtgtctgatgaggagccacaattgatggctaaattgta |
4696313 |
T |
|
| Q |
101 |
atcagggttgtatgaactagcaattagaggaaataatag |
139 |
Q |
| |
|
| ||||| |||||| |||||| |||||| || ||||| |
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|
| T |
4696312 |
aatagggtcgtatgaggtagcaactagagggaacaatag |
4696274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 4663576 - 4663698
Alignment:
| Q |
17 |
gttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtgtttgttgaggagccacaactgatggctaaactgtaatcagggttgtatgaa |
116 |
Q |
| |
|
||||||| | |||||| |||||||||||| | | || || ||||| ||||| | ||| |||||||||||||||||| ||||| ||||||||||| |
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|
| T |
4663576 |
gttatcattattatcaccaacccaaattccttcgtccgagtcagtattgtttatatcggaaccacaactgatggctaaattgtaaattgggttgtatgag |
4663675 |
T |
|
| Q |
117 |
ctagcaattagaggaaataatag |
139 |
Q |
| |
|
||||||||||||| || ||||| |
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|
| T |
4663676 |
gtagcaattagagggaacaatag |
4663698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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