View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8029_low_11 (Length: 324)
Name: NF8029_low_11
Description: NF8029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8029_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 44859664 - 44859357
Alignment:
| Q |
1 |
aaagggtaagaattaagatattacagcacaagagaggtaatatacattgaagtcttgtaaaaatatgttagcaaagcgtagtttagaaataaaaatctaa |
100 |
Q |
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| T |
44859664 |
aaagggtaagaattaagatattacagcacaagagaggtaatatacattgaagtcttgtaaaaatatgttagcaaagcgtagtttagaaataaaaatataa |
44859565 |
T |
|
| Q |
101 |
actaacagggcactcctggagaggttggctaagatatgatgttgctgaagttcagtgaggttacctttgatccattcgaatagccccggataatcaactc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44859564 |
actaacagggcactcctggagaggttggctaagatatgatgttgctgaagttcagtgaggttaccttcgatccattcgaatagccccggataatcaactc |
44859465 |
T |
|
| Q |
201 |
tggatcctggcccataaaaatgtaatgaaaaatttcgagcagaagcaagttatcctgacggagatagacattagaactcccaacattttgagatacaacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44859464 |
tggatcctggcccataaaaatgtaatgaaaaatttcgagcagaagcaagttatcctgacggagatagacattagaactcccaacattttgagatacaacc |
44859365 |
T |
|
| Q |
301 |
aagattat |
308 |
Q |
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|||||||| |
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| T |
44859364 |
aagattat |
44859357 |
T |
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