View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8029_low_13 (Length: 307)

Name: NF8029_low_13
Description: NF8029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8029_low_13
NF8029_low_13
[»] chr2 (3 HSPs)
chr2 (27-293)||(40063080-40063346)
chr2 (26-293)||(40093711-40093978)
chr2 (30-293)||(40081431-40081694)
[»] chr4 (1 HSPs)
chr4 (65-283)||(22012538-22012756)
[»] chr3 (1 HSPs)
chr3 (186-226)||(44356174-44356214)


Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 27 - 293
Target Start/End: Complemental strand, 40063346 - 40063080
Alignment:
Q  27 tcatgtttaaactcttcttcattgaaaatttgcaacacttacaatgtctgtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcctc 126  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40063346 tcatgtttaaactctttttcattgaaaatttgcaacacttacaatgtctgtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcctc 40063247  T
Q  127 tgtagttgcatgagtctgtgcaatcggcatttgaagcaacatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcgccttttcccat 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40063246 tgtagttgcatgagtctgtgcaatcggcatttgaagcaacatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcaccttttcccat 40063147  T
Q  227 ccccgtgaagtcaatcgcaactggattactgccggatggagcatcaaagtttgtctaatgcaacatg 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40063146 ccccgtgaagtcaatcgcaactggattactgccggatggagcatcaaagtttgtctaatgcaacatg 40063080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 26 - 293
Target Start/End: Complemental strand, 40093978 - 40093711
Alignment:
Q  26 ctcatgtttaaactcttcttcattgaaaatttgcaacacttacaatgtctgtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcct 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40093978 ctcatgtttaaactcttcttcattgaaaatttgcaacacttacaatgtctgtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcct 40093879  T
Q  126 ctgtagttgcatgagtctgtgcaatcggcatttgaagcaacatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcgccttttccca 225  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40093878 ctgtagttgcatgagtctgtgcaatcgacatttgaagcaacatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcgccttttccca 40093779  T
Q  226 tccccgtgaagtcaatcgcaactggattactgccggatggagcatcaaagtttgtctaatgcaacatg 293  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40093778 tccctgtgaagtcaatcacaactggattactgccggatggagcatcaaagtttgtctaatgcaacatg 40093711  T

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Target: chr2; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 30 - 293
Target Start/End: Complemental strand, 40081694 - 40081431
Alignment:
Q  30 tgtttaaactcttcttcattgaaaatttgcaacacttacaatgtctgtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgt 129  Q
    |||||||||| || || ||||||||||||||||||||||||||||||||| ||||||||||| ||| || ||||||| | |  |||| |||||||||| |    
T  40081694 tgtttaaacttttttttattgaaaatttgcaacacttacaatgtctgtgacggttttccacagttcttgcgacatttagatgaagtataaggtcctctat 40081595  T
Q  130 agttgcatgagtctgtgcaatcggcatttgaagcaacatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcgccttttcccatccc 229  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40081594 agttgcatgagtctgtgcaaccggcatttgaagcgacatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcaccttttcccatccc 40081495  T
Q  230 cgtgaagtcaatcgcaactggattactgccggatggagcatcaaagtttgtctaatgcaacatg 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40081494 cgtgaagtcaatcgcaactggattactgccggatggagcatcaaagtttgtctagtgcaacatg 40081431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 65 - 283
Target Start/End: Original strand, 22012538 - 22012756
Alignment:
Q  65 ttacaatgtctgtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcggcatttgaagca 164  Q
    ||||||||||||||||||||||||||||||| || | ||||||| |  || | | | |||||| || ||||||||||| || ||  | | ||| | ||      
T  22012538 ttacaatgtctgtgatggttttccacaattcttgaggcatttggatgcagaatatgttcctctataattgcatgagtcagtacagccagaattcggagag 22012637  T
Q  165 acatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcgccttttcccatccccgtgaagtcaatcgcaactggattactgccggatg 264  Q
    |  ||||| |||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||| || ||||| || ||||| ||||| |    
T  22012638 atgtatgttggccagtatcgcccaatgctctgtccgttcacccaagcttcgccttttcccatccccgtgaagtcgattgcaaccgggttacttccggagg 22012737  T
Q  265 gagcatcaaagtttgtcta 283  Q
    ||||| ||||||| |||||    
T  22012738 gagcaacaaagttcgtcta 22012756  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 44356174 - 44356214
Alignment:
Q  186 ccaatgctttgtccatttacccaagcctcgccttttcccat 226  Q
    |||||||||||||||||||||||||| || |||||| ||||    
T  44356174 ccaatgctttgtccatttacccaagcttcaccttttgccat 44356214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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