View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8029_low_20 (Length: 252)
Name: NF8029_low_20
Description: NF8029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8029_low_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 40103408 - 40103168
Alignment:
| Q |
12 |
aagaatatccatgtattgttgaggaaaaataacggaacaacaaaattttaatgacaataaattacctgataccatgtgagtggtttagtggagctttgaa |
111 |
Q |
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| T |
40103408 |
aagattatccatgtatagttgaggaaaaataacggaacaacaaaattttaatgacaataaattacctgataccatgtgagtggtttagtggagctttgaa |
40103309 |
T |
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| Q |
112 |
aacttttccactgaactttacttgatccactgactgtaaagatttgtaatctttctcccaacaacccaaccttcatttaaaaattctacatcagcatgca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40103308 |
aacttttccactgaactttacttgatccactgactgtaaagatttgtaatttttctcccaacaacccaaccttcatttaaaaattctacatcagcatgca |
40103209 |
T |
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| Q |
212 |
gtggacaacattttgtttaaatgattagcagcaatcagagc |
252 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |
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| T |
40103208 |
gtggacaacattttgtttaaatgattagtagcaatcagagc |
40103168 |
T |
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