View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8029_low_23 (Length: 247)
Name: NF8029_low_23
Description: NF8029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8029_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 79 - 228
Target Start/End: Complemental strand, 13281408 - 13281261
Alignment:
| Q |
79 |
aatcatataatgttaaacctctagtatgaaagctttaggcttagactacaaaaacaactannnnnnncattccttcaatcggcgaagatttctcttgtaa |
178 |
Q |
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| T |
13281408 |
aatcatataatgttaaacctctagtatgaaagctttaggcttagactacaaaaacaactattttt--cattccttcaatcggcgaagatttttcttgtaa |
13281311 |
T |
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| Q |
179 |
attttgatgtcacaaacacctccttttcctttaacatcaatatcatcaac |
228 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13281310 |
attttgatgtcacaaatacctccttttcctttaacatcaatatcatcaac |
13281261 |
T |
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