View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8029_low_24 (Length: 244)
Name: NF8029_low_24
Description: NF8029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8029_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 5572667 - 5572885
Alignment:
| Q |
9 |
agcagagaacttattattgaaatgttccactagagatttaagcttgtaattgaaaagtgacggagtactgcttgaaagtcccaacccaactaacacatat |
108 |
Q |
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| T |
5572667 |
agcagagaacttattattgaaatgttccactagagatttaagcttgtaattgaaaagtgacggagtactgcttgaaagtcccaacccaactaacacatat |
5572766 |
T |
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| Q |
109 |
tttctcgctccaatgtcatgtagagcctggaatcaaatggaactaataaaccatcatattaaatatattgaaacaattagtgaaagcaagagtaaaacac |
208 |
Q |
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| T |
5572767 |
tttctcgctccaatgtcatgtagagcctggaatcaaatggaactaataaacaatcatattaaatatattgaatcaattagtgaaagcaagagtaaaacat |
5572866 |
T |
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| Q |
209 |
aaattctgcgtggtcatat |
227 |
Q |
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| T |
5572867 |
aaattttgagtggtcatat |
5572885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 5580486 - 5580623
Alignment:
| Q |
9 |
agcagagaacttattattgaaatgttccactagagatttaagcttgtaattgaaaagtgacggagtactgcttgaaagtcccaacccaactaacacatat |
108 |
Q |
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| T |
5580486 |
agcagagaacttattattgaaatgttccactagagatttaagcttggaaattaaaagtaacggagtgctgcctgaaagttccaacccaactaacacatat |
5580585 |
T |
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| Q |
109 |
tttctcgctccaatgtcatgtagagcctggaatcaaat |
146 |
Q |
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| T |
5580586 |
tttcttgctccaatgtcatgtagagcctggaataaaat |
5580623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 5586077 - 5586122
Alignment:
| Q |
9 |
agcagagaacttattattgaaatgttccactagagatttaagcttg |
54 |
Q |
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| T |
5586077 |
agcagagaacttattattgaaatgatccactagagatttaagcttg |
5586122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 5592346 - 5592391
Alignment:
| Q |
9 |
agcagagaacttattattgaaatgttccactagagatttaagcttg |
54 |
Q |
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| T |
5592346 |
agcagagaacttattattgaaatgatccactaaagatttaagcttg |
5592391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 5575607 - 5575658
Alignment:
| Q |
13 |
gagaacttattattgaaatgttccactagagatttaagcttgtaattgaaaa |
64 |
Q |
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| T |
5575607 |
gagaacttattattgaaatgatccactaaaaatttaagcttgaaattgaaaa |
5575658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 5575745 - 5575784
Alignment:
| Q |
91 |
aacccaactaacacatattttctcgctccaatgtcatgta |
130 |
Q |
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| T |
5575745 |
aaccctactaacacatattttctagctccaatgtcatgta |
5575784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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