View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8029_low_25 (Length: 239)
Name: NF8029_low_25
Description: NF8029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8029_low_25 |
 | |
|
| [»] scaffold0321 (2 HSPs) |
| |
|
Alignment Details
Target: scaffold0321 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 76 - 239
Target Start/End: Original strand, 15705 - 15868
Alignment:
| Q |
76 |
tgatttgtataactttgtgagtgtttgagtgtttaatctgccaatccttgtttgaatcctcttttgtcaatcactggatggatgatagaggtgaatcctc |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15705 |
tgatttgtataactttgtgagtgtttgagtgtttaatctgccaatccttgtttgaatcctcttttgtcaatcactggatggatgatagaggtgaatcctc |
15804 |
T |
|
| Q |
176 |
ttttgttggtaaacgatatagcaatgcttaacattgtttctattattctatatatagcagttct |
239 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15805 |
ttttgtcggtaaacgatatagcaatgcttaacattgtttctattattctatatatagcagttct |
15868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0321; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 15609 - 15669
Alignment:
| Q |
18 |
gtcttctataataggatcggggaattctgtgtcttcattttcgtggaaatatgtttcatgat |
79 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15609 |
gtcttctataataggatcgggga-ttctgtgtcttcattttcgtggaaatatgtttcatgat |
15669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 8666578 - 8666638
Alignment:
| Q |
17 |
agtcttctataataggatcggggaattctgtgtcttcattttcgtggaaatatgtttcatgat |
79 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||| |||||| ||| ||| ||||| |
|
|
| T |
8666578 |
agtcttctataatagaat--gggaattctgtgtcttcatttttgtggaagtatattttatgat |
8666638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 8666673 - 8666727
Alignment:
| Q |
76 |
tgatttgtataactttgtgagtgtttgagtgtttaatctgccaatccttgtttgaa |
131 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||| | |||||||||| |
|
|
| T |
8666673 |
tgatttgtataactt-gcaagtgtttgagtgtttaatctgccagttcttgtttgaa |
8666727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University