View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8029_low_28 (Length: 220)
Name: NF8029_low_28
Description: NF8029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8029_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 4 - 203
Target Start/End: Complemental strand, 40103164 - 40102965
Alignment:
| Q |
4 |
tgattcaaacacacttctaattcttgtacattttaagcattggataatgatagtttaaagggattgaatatgaagaattgtgctcagagtaaagttgtag |
103 |
Q |
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| T |
40103164 |
tgattcaaacacacttctaattcttgtacattttaagcattggataatgatagtttaaagggattgaatatgaagaattgtgttcagagtaaagttgtag |
40103065 |
T |
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| Q |
104 |
aaaaagcaatgctaaagaaacatgattgataattgtgatatgatatcatttaagtctactgaatcaatatctcattatgcagagataatcacctgatatc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40103064 |
aaaaagcaatgctaaagaaacatgattgataattgtgatatgatatcatttaagtctactgaatcaatatctcattatgcagagataatcacctgatatc |
40102965 |
T |
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