View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8029_low_30 (Length: 202)

Name: NF8029_low_30
Description: NF8029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8029_low_30
NF8029_low_30
[»] chr8 (3 HSPs)
chr8 (97-188)||(18106379-18106470)
chr8 (103-188)||(18097267-18097352)
chr8 (103-188)||(18138901-18138986)
[»] chr4 (1 HSPs)
chr4 (106-148)||(37875943-37875985)
[»] chr2 (1 HSPs)
chr2 (106-148)||(23895696-23895738)


Alignment Details
Target: chr8 (Bit Score: 92; Significance: 7e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 97 - 188
Target Start/End: Original strand, 18106379 - 18106470
Alignment:
Q  97 aaccctattaataattagttttaagccattcgggcatgttgtgcctagagtatgccacatgatcagtgcatgtgaatttggttgttagaagt 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18106379 aaccctattaataattagttttaagccattcgggcatgttgtgcctagagtatgccacatgatcagtgcatgtgaatttggttgttagaagt 18106470  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 103 - 188
Target Start/End: Original strand, 18097267 - 18097352
Alignment:
Q  103 attaataattagttttaagccattcgggcatgttgtgcctagagtatgccacatgatcagtgcatgtgaatttggttgttagaagt 188  Q
    ||||||||||||||||||||||||| |||||||||||| |||| | |||||| |||||| ||||||||||||||||||||||||||    
T  18097267 attaataattagttttaagccattcaggcatgttgtgcttagactgtgccacttgatcaatgcatgtgaatttggttgttagaagt 18097352  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 18138986 - 18138901
Alignment:
Q  103 attaataattagttttaagccattcgggcatgttgtgcctagagtatgccacatgatcagtgcatgtgaatttggttgttagaagt 188  Q
    |||| |||||||||||||||||||| |||||||||||| |||||| |||||| |||||| || |||||| ||||||||||||||||    
T  18138986 attagtaattagttttaagccattcaggcatgttgtgcttagagtgtgccacttgatcaatgaatgtgagtttggttgttagaagt 18138901  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 37875943 - 37875985
Alignment:
Q  106 aataattagttttaagccattcgggcatgttgtgcctagagta 148  Q
    |||||||||||||||||||||| ||||||||| || |||||||    
T  37875943 aataattagttttaagccattcaggcatgttgcgcttagagta 37875985  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 23895738 - 23895696
Alignment:
Q  106 aataattagttttaagccattcgggcatgttgtgcctagagta 148  Q
    |||||||||||||||||||||| ||||||||| || |||||||    
T  23895738 aataattagttttaagccattcaggcatgttgcgcttagagta 23895696  T

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