View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8029_low_4 (Length: 461)

Name: NF8029_low_4
Description: NF8029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8029_low_4
NF8029_low_4
[»] chr6 (2 HSPs)
chr6 (1-233)||(24127330-24127562)
chr6 (318-442)||(24127647-24127771)
[»] chr8 (2 HSPs)
chr8 (1-233)||(45160705-45160937)
chr8 (318-442)||(45160494-45160618)
[»] chr3 (10 HSPs)
chr3 (337-440)||(8716656-8716759)
chr3 (1-176)||(8722676-8722851)
chr3 (337-440)||(9068543-9068646)
chr3 (1-176)||(9074563-9074738)
chr3 (318-419)||(8722971-8723072)
chr3 (318-419)||(9074858-9074959)
chr3 (68-233)||(8716390-8716551)
chr3 (68-233)||(9068277-9068438)
chr3 (318-437)||(5116850-5116969)
chr3 (40-146)||(5116645-5116751)
[»] chr1 (2 HSPs)
chr1 (1-129)||(24743953-24744081)
chr1 (324-425)||(16335724-16335825)
[»] chr7 (1 HSPs)
chr7 (318-436)||(9519000-9519118)
[»] chr5 (1 HSPs)
chr5 (366-436)||(40805679-40805749)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 24127330 - 24127562
Alignment:
Q  1 tcaaaagacgagatgtaggttgtttgtcaagactttcggacatcatgtccaaaactcgacgtactgcaaaaaaccgctctgctgtagcacaaacgtaggc 100  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24127330 tcaaaagacgacatgtaggttgcttgtcaagactttcggacatcatgtccaaaactcgacgtactgcaaaaaaccgctctgctgtagcacaaacgtaggc 24127429  T
Q  101 caaaccatcatcatcgaacaaaattttctggaatataaaggttgcagtctgcagagataaacaagaaaatatatctacttaaatttagaacaagataact 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24127430 caaaccatcatcatcgaacaaaattttctggaatataaaggttgcagtctacagagataaacaagaaaatatatatacttaaatttagaacaagataact 24127529  T
Q  201 tacatatgaaatggtgttaatcacatacccaac 233  Q
    |||||||||||||||||||||||||||||||||    
T  24127530 tacatatgaaatggtgttaatcacatacccaac 24127562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 318 - 442
Target Start/End: Original strand, 24127647 - 24127771
Alignment:
Q  318 gagaaactaacagtttttgatatttcattgccgatctccatgttgctcaagcacagtggaattatctcacttaaaataaggtaacccaagacttctttgg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24127647 gagaaactaacagtttttgatatttcattgccgatctccatgttgctcaagcagagtggaattatctcacttaaaataaggtaacccaagacttctttgg 24127746  T
Q  418 tgttaacctgtgaatatcaagtatc 442  Q
    |||||||||||||||||||||||||    
T  24127747 tgttaacctgtgaatatcaagtatc 24127771  T

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Target: chr8 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 45160937 - 45160705
Alignment:
Q  1 tcaaaagacgagatgtaggttgtttgtcaagactttcggacatcatgtccaaaactcgacgtactgcaaaaaaccgctctgctgtagcacaaacgtaggc 100  Q
    |||||||||||| ||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  45160937 tcaaaagacgaggtgtgggttgcttgtcaagactttcgaacatcatgtccaaaactcgacgtactgcaaaaaaccgctctgctgtagcacaaacgtaagc 45160838  T
Q  101 caaaccatcatcatcgaacaaaattttctggaatataaaggttgcagtctgcagagataaacaagaaaatatatctacttaaatttagaacaagataact 200  Q
    ||||||||||||||||||||||||||| || | |||||| || |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45160837 caaaccatcatcatcgaacaaaattttatgaattataaatgtcgcagcctgtagagataaacaagaaaatatatctacttaaatttagaacaagataact 45160738  T
Q  201 tacatatgaaatggtgttaatcacatacccaac 233  Q
    | |||||||||| ||||||||||||||||||||    
T  45160737 ttcatatgaaattgtgttaatcacatacccaac 45160705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 318 - 442
Target Start/End: Complemental strand, 45160618 - 45160494
Alignment:
Q  318 gagaaactaacagtttttgatatttcattgccgatctccatgttgctcaagcacagtggaattatctcacttaaaataaggtaacccaagacttctttgg 417  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||| |||||||| |    
T  45160618 gagaaactaacagtttgtgatatttcatttccgatctccatgttgctcaagcacaatggaattacctcgcttaaaataaggtaacccaaaacttcttttg 45160519  T
Q  418 tgttaacctgtgaatatcaagtatc 442  Q
    ||||| |||||||||||||||||||    
T  45160518 tgttatcctgtgaatatcaagtatc 45160494  T

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Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 337 - 440
Target Start/End: Original strand, 8716656 - 8716759
Alignment:
Q  337 atatttcattgccgatctccatgttgctcaagcacagtggaattatctcacttaaaataaggtaacccaagacttctttggtgttaacctgtgaatatca 436  Q
    |||||||||| ||||| ||||||||||||||||||| |||||||||||| ||||||||||||||| | ||||||||||||||||| || ||||||||| |    
T  8716656 atatttcatttccgatttccatgttgctcaagcacaatggaattatctcgcttaaaataaggtaatctaagacttctttggtgttgacgtgtgaatataa 8716755  T
Q  437 agta 440  Q
    ||||    
T  8716756 agta 8716759  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 8722676 - 8722851
Alignment:
Q  1 tcaaaagacgagatgtaggttgtttgtcaagactttcggacatcatgtccaaaactcgacgtactgcaaaaaaccgctctgctgtagcacaaacgtaggc 100  Q
    |||||||||||| ||||||||  || |||||| ||| | ||||||| |||||||||||| ||| |||||||||||  | || ||||||||| ||||| |     
T  8722676 tcaaaagacgaggtgtaggttccttctcaagatttttgaacatcatatccaaaactcgatgtagtgcaaaaaaccattatgttgtagcacagacgtaagg 8722775  T
Q  101 caaaccatcatcatcgaacaaaattttctggaatataaaggttgcagtctgcagagataaacaagaaaatatatct 176  Q
    |||||||||||| || |||||||||||||| | |||||| | ||||  ||||| |||||| |||||||||||||||    
T  8722776 caaaccatcatcgtctaacaaaattttctgaattataaatgatgcaagctgcaaagataagcaagaaaatatatct 8722851  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 337 - 440
Target Start/End: Original strand, 9068543 - 9068646
Alignment:
Q  337 atatttcattgccgatctccatgttgctcaagcacagtggaattatctcacttaaaataaggtaacccaagacttctttggtgttaacctgtgaatatca 436  Q
    |||||||||| ||||| ||||||||||||||||||| |||||||||||| ||||||||||||||| | ||||||||||||||||| || ||||||||| |    
T  9068543 atatttcatttccgatttccatgttgctcaagcacaatggaattatctcgcttaaaataaggtaatctaagacttctttggtgttgacgtgtgaatataa 9068642  T
Q  437 agta 440  Q
    ||||    
T  9068643 agta 9068646  T

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Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 9074563 - 9074738
Alignment:
Q  1 tcaaaagacgagatgtaggttgtttgtcaagactttcggacatcatgtccaaaactcgacgtactgcaaaaaaccgctctgctgtagcacaaacgtaggc 100  Q
    |||||||||||| ||||||||  || |||||| ||| | ||||||| |||||||||||| ||| |||||||||||  | || ||||||||| ||||| |     
T  9074563 tcaaaagacgaggtgtaggttccttctcaagatttttgaacatcatatccaaaactcgatgtagtgcaaaaaaccattatgttgtagcacagacgtaagg 9074662  T
Q  101 caaaccatcatcatcgaacaaaattttctggaatataaaggttgcagtctgcagagataaacaagaaaatatatct 176  Q
    |||||||||||| || |||||||||||||| | |||||| | ||||  ||||| |||||| |||||||||||||||    
T  9074663 caaaccatcatcgtctaacaaaattttctgaattataaatgatgcaagctgcaaagataagcaagaaaatatatct 9074738  T

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Target: chr3; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 318 - 419
Target Start/End: Original strand, 8722971 - 8723072
Alignment:
Q  318 gagaaactaacagtttttgatatttcattgccgatctccatgttgctcaagcacagtggaattatctcacttaaaataaggtaacccaagacttctttgg 417  Q
    ||||||||||||||||| ||||||||||| ||||| |||||||||||| ||| || |||||||||||||||| ||||||||||||| || ||||||||||    
T  8722971 gagaaactaacagttttggatatttcatttccgatttccatgttgctctagcgcaatggaattatctcacttgaaataaggtaacctaaaacttctttgg 8723070  T
Q  418 tg 419  Q
    ||    
T  8723071 tg 8723072  T

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Target: chr3; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 318 - 419
Target Start/End: Original strand, 9074858 - 9074959
Alignment:
Q  318 gagaaactaacagtttttgatatttcattgccgatctccatgttgctcaagcacagtggaattatctcacttaaaataaggtaacccaagacttctttgg 417  Q
    ||||||||||||||||| ||||||||||| ||||| |||||||||||| ||| || |||||||||||||||| ||||||||||||| || ||||||||||    
T  9074858 gagaaactaacagttttggatatttcatttccgatttccatgttgctctagcgcaatggaattatctcacttgaaataaggtaacctaaaacttctttgg 9074957  T
Q  418 tg 419  Q
    ||    
T  9074958 tg 9074959  T

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Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 68 - 233
Target Start/End: Original strand, 8716390 - 8716551
Alignment:
Q  68 aaaaaaccgctctgctgtagcacaaacgtaggccaaaccatcatcatcgaacaaaattttctggaatataaaggttgcagtctgcagagataaacaagaa 167  Q
    ||||||||||| || ||| |||||||||||  ||||| | ||||||||  | |||||||| || | |||||| |||||   ||||||||||||  |||||    
T  8716390 aaaaaaccgctatgttgttgcacaaacgtaaaccaaatcttcatcatcttataaaattttatgaattataaatgttgcgacctgcagagataacaaagaa 8716489  T
Q  168 aatatatctacttaaatttagaacaagataacttacatatgaaatggtgttaatcacatacccaac 233  Q
    | |||||||   |||||||||||||||||||||| || ||||||| ||||| ||||||||||||||    
T  8716490 a-tatatct---taaatttagaacaagataactttcacatgaaattgtgttgatcacatacccaac 8716551  T

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Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 68 - 233
Target Start/End: Original strand, 9068277 - 9068438
Alignment:
Q  68 aaaaaaccgctctgctgtagcacaaacgtaggccaaaccatcatcatcgaacaaaattttctggaatataaaggttgcagtctgcagagataaacaagaa 167  Q
    ||||||||||| || ||| |||||||||||  ||||| | ||||||||  | |||||||| || | |||||| |||||   ||||||||||||  |||||    
T  9068277 aaaaaaccgctatgttgttgcacaaacgtaaaccaaatcttcatcatcttataaaattttatgaattataaatgttgcgacctgcagagataacaaagaa 9068376  T
Q  168 aatatatctacttaaatttagaacaagataacttacatatgaaatggtgttaatcacatacccaac 233  Q
    | |||||||   |||||||||||||||||||||| || ||||||| ||||| ||||||||||||||    
T  9068377 a-tatatct---taaatttagaacaagataactttcacatgaaattgtgttgatcacatacccaac 9068438  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 437
Target Start/End: Original strand, 5116850 - 5116969
Alignment:
Q  318 gagaaactaacagtttttgatatttcattgccgatctccatgttgctcaagcacagtggaattatctcacttaaaataaggtaacccaagacttctttgg 417  Q
    |||||||||||| ||||||  | |||||||||| | | ||| ||   |||||| |||| ||||||||||||| | | |  | |||| | | |||||||||    
T  5116850 gagaaactaacaatttttgtcaattcattgccgttttgcatatttgacaagcatagtgaaattatctcacttgagagatagaaacctatggcttctttgg 5116949  T
Q  418 tgttaacctgtgaatatcaa 437  Q
    ||||||||||||||||||||    
T  5116950 tgttaacctgtgaatatcaa 5116969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 146
Target Start/End: Original strand, 5116645 - 5116751
Alignment:
Q  40 acatcatgtccaaaactcgacgtactgcaaaaaaccgctctgctgtagcacaaacgtaggccaaaccatcatcatcgaacaaaattttctggaatataaa 139  Q
    ||||||||| ||||||||||| |||| |||||||   ||||| ||||||||||||    |||||||||||||| || || | ||||||| | | ||||||    
T  5116645 acatcatgttcaaaactcgacatactccaaaaaaattctctgttgtagcacaaacacgagccaaaccatcatcgtctaatataattttcagaattataaa 5116744  T
Q  140 ggttgca 146  Q
     ||||||    
T  5116745 tgttgca 5116751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 24743953 - 24744081
Alignment:
Q  1 tcaaaagacgagatgtaggttgtttgtcaagactttcggacatcatgtccaaaactcgacgtactgcaaaaaaccgctctgctgtagcacaaacgtaggc 100  Q
    |||||||||||| || |||||| ||||||| |||| |  ||||| |||||||| ||||||  ||||||||||| || |||| |||| ||||||  || ||    
T  24743953 tcaaaagacgaggtgaaggttgattgtcaacacttgccaacatcctgtccaaagctcgaccaactgcaaaaaaacgatctggtgtaccacaaatatatgc 24744052  T
Q  101 caaaccatcatcatcgaacaaaattttct 129  Q
    ||||||||| |||||  ||| ||||||||    
T  24744053 caaaccatcgtcatctgacagaattttct 24744081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 425
Target Start/End: Original strand, 16335724 - 16335825
Alignment:
Q  324 ctaacagtttttgatatttcattgccgatctccatgttgctcaagcacagtggaattatctcacttaaaataaggtaacccaagacttctttggtgttaa 423  Q
    |||||| ||||| ||| ||| || ||||| ||| | ||||||| ||| | |||||||||||||||| ||| |||| |||| |  ||||||||||| ||||    
T  16335724 ctaacaatttttaataattcttttccgatttccttcttgctcatgcataatggaattatctcacttgaaagaaggaaacctataacttctttggttttaa 16335823  T
Q  424 cc 425  Q
    ||    
T  16335824 cc 16335825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 318 - 436
Target Start/End: Complemental strand, 9519118 - 9519000
Alignment:
Q  318 gagaaactaacagtttttgatatttcattgccgatctccatgttgctcaagcacagtggaattatctcacttaaaataaggtaacccaagacttctttgg 417  Q
    ||||||||||||||||| |||| ||| |||||||| ||||| ||||  | ||| ||||||||||||||||||  || |||  || | | |  ||||||||    
T  9519118 gagaaactaacagttttggataattctttgccgatttccatattgcataggcatagtggaattatctcacttctaagaagaaaatctatgctttctttgg 9519019  T
Q  418 tgttaacctgtgaatatca 436  Q
    ||||||||||||| |||||    
T  9519018 tgttaacctgtgactatca 9519000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 436
Target Start/End: Original strand, 40805679 - 40805749
Alignment:
Q  366 aagcacagtggaattatctcacttaaaataaggtaacccaagacttctttggtgttaacctgtgaatatca 436  Q
    ||||| ||||||||||| ||| ||  || |||| ||| || ||||||||||||||||||||||||||||||    
T  40805679 aagcatagtggaattatttcatttggaagaaggaaactcatgacttctttggtgttaacctgtgaatatca 40805749  T

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