View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8029_low_7 (Length: 410)
Name: NF8029_low_7
Description: NF8029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8029_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 8 - 395
Target Start/End: Original strand, 30956109 - 30956499
Alignment:
| Q |
8 |
atattattctgaaactactttgattggatatttcatgtttttcttcaggcaaaaagagaatctggtcttcctttatccttgaaaaaattaggaaacacac |
107 |
Q |
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| T |
30956109 |
atattattctgaaactactttgattcgatatttcatgtttttcttcaggcaaaaagagaatctggtcttcctttatccttgaaaaaattaggaaacacac |
30956208 |
T |
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| Q |
108 |
gggaaaagaaatcgttgacatggaaggcgtttataagtcacgcatgtgacagtgtgcttgacattcctcccaagtatcactgggccctactgctggtatg |
207 |
Q |
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| T |
30956209 |
gggaaaagaaatcgttgacatggaaggcgtttataagtcacgcatgtgacagtgtgcttgacattcctcccaagtatcactgggccttactgctgatatg |
30956308 |
T |
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| Q |
208 |
tgttagtttcctcagttatcaagcaaaaaacacaa---ctccatttgaatatttccaactggaaaaaacaattaaggcaccaccacaaacactagtactt |
304 |
Q |
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| T |
30956309 |
tgttagtttcctcagttatcaagcaaaaaacacaactgctccatttgaatatttccaactggaaaaaacaattaaggcaccaccacaaacactagtactt |
30956408 |
T |
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| Q |
305 |
gcctttggggaagcatttgaagcattctttccagaaataacacatatcacaaagttcatgttgtgttattttctgactctgatgttggttt |
395 |
Q |
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| T |
30956409 |
gcctttggggaagcatttgaagtattctttccagaaataacacacatcacaaagttcatgttgtgttattttctgactctgatgttggttt |
30956499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 285 - 394
Target Start/End: Original strand, 30960366 - 30960475
Alignment:
| Q |
285 |
caccacaaacactagtacttgcctttggggaagcatttgaagcattctttccagaaataacacatatcacaaagttcatgttgtgttattttctgactct |
384 |
Q |
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| T |
30960366 |
cacctcaatcactagtacttccatttggggaagcatttaaagcattctttccagaaatgacacaaatagcaaagttcattttgtgttattttctgacatt |
30960465 |
T |
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| Q |
385 |
gatgttggtt |
394 |
Q |
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| T |
30960466 |
gatgttggtt |
30960475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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