View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8029_low_8 (Length: 392)
Name: NF8029_low_8
Description: NF8029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8029_low_8 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 17 - 381
Target Start/End: Complemental strand, 41540781 - 41540417
Alignment:
| Q |
17 |
cagctggtccactctcaatgcctatagctatatcttcaacatatgctatcttcccttccctaacataaggcaaaattgtgtccaaaaacttgggatataa |
116 |
Q |
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| T |
41540781 |
cagctggtccactctcaatgcctatagctatatcttcaacatatgctatcttcccttccctaacataaggcaaaattgtgtccaaaaacttgggatataa |
41540682 |
T |
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| Q |
117 |
atgatagtaatcatatacagtgaatgcatctacatgaatctgcttgtatattatgttgatcaaattttttatgccctgaggttcatcaagttcatactgt |
216 |
Q |
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| T |
41540681 |
atgatagtaatcatatacagtgaatgcatcgacatgaatctgcttgtatatgatgttgatcaaattttttatgccctgaggttcatcaagttcatactgt |
41540582 |
T |
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| Q |
217 |
gagatcatttcagccaccacaattcgaccgcggcgtctcatgttaagaagggctgcttcaagcatgtctccaccaacattgtcaaagtatatgtcaattc |
316 |
Q |
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| T |
41540581 |
gagatcattccagccaccacaattcgaccgcggcgtctcatgttaagaagggctgcttcaagcatgtgtccaccaacattgtcaaagtatatgtcaattc |
41540482 |
T |
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| Q |
317 |
cttccggaaagtacctatcaacaattgaaacagaacaaaagattgtggacatgtttagcattcat |
381 |
Q |
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| T |
41540481 |
cttcgggaaagtacctatcaactattgaaacagaacaaaagattgtgtacatgtttagcattcat |
41540417 |
T |
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Target: scaffold0011 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 332
Target Start/End: Complemental strand, 231689 - 231625
Alignment:
| Q |
268 |
gctgcttcaagcatgtctccaccaacattgtcaaagtatatgtcaattccttccggaaagtacct |
332 |
Q |
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| T |
231689 |
gctgcttctagcatttctcccccgacattgtcaaaatatatgtcaattccatctggaaagtacct |
231625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 333
Target Start/End: Complemental strand, 2435882 - 2435835
Alignment:
| Q |
286 |
ccaccaacattgtcaaagtatatgtcaattccttccggaaagtaccta |
333 |
Q |
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| T |
2435882 |
ccaccaacattctcaaagtaaatgtcaatgccttctggaaagtaccta |
2435835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 2432518 - 2432474
Alignment:
| Q |
289 |
ccaacattgtcaaagtatatgtcaattccttccggaaagtaccta |
333 |
Q |
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| T |
2432518 |
ccaacattctcaaagtaaatgtcaatgccttctggaaagtaccta |
2432474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 2516476 - 2516520
Alignment:
| Q |
289 |
ccaacattgtcaaagtatatgtcaattccttccggaaagtaccta |
333 |
Q |
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| T |
2516476 |
ccaacattctcaaagtaaatgtcaatgccttctggaaagtaccta |
2516520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 337
Target Start/End: Original strand, 944983 - 945066
Alignment:
| Q |
254 |
tcatgttaagaagggctgcttcaagcatgtctccaccaacattgtcaaagtatatgtcaattccttccggaaagtacctatcaa |
337 |
Q |
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| T |
944983 |
tcatgttaaggagggccgcatcaagcatgtcaccgcccacattatcaaaataaatgtcaatgccttcgggaaaatacctgtcaa |
945066 |
T |
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