View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8029_low_9 (Length: 341)

Name: NF8029_low_9
Description: NF8029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8029_low_9
NF8029_low_9
[»] chr7 (7 HSPs)
chr7 (254-323)||(32710721-32710790)
chr7 (193-245)||(46437312-46437364)
chr7 (134-175)||(46437375-46437416)
chr7 (202-248)||(38663006-38663052)
chr7 (203-252)||(28998019-28998068)
chr7 (202-253)||(46913464-46913515)
chr7 (11-44)||(46437506-46437539)
[»] chr2 (2 HSPs)
chr2 (134-251)||(16916381-16916491)
chr2 (11-44)||(16916258-16916291)
[»] chr1 (14 HSPs)
chr1 (193-249)||(18431702-18431758)
chr1 (193-252)||(22788449-22788508)
chr1 (202-255)||(33403420-33403473)
chr1 (135-175)||(18431649-18431689)
chr1 (203-257)||(37187905-37187959)
chr1 (11-44)||(18431525-18431558)
chr1 (193-248)||(6154642-6154697)
chr1 (202-248)||(7786800-7786846)
chr1 (202-251)||(2123859-2123908)
chr1 (11-44)||(22788277-22788310)
chr1 (134-175)||(22788391-22788432)
chr1 (202-251)||(38740983-38741032)
chr1 (202-251)||(50158589-50158638)
chr1 (202-234)||(32940712-32940744)
[»] chr6 (6 HSPs)
chr6 (193-248)||(5014160-5014215)
chr6 (134-175)||(5014100-5014141)
chr6 (134-175)||(16693040-16693081)
chr6 (193-251)||(16692962-16693020)
chr6 (11-44)||(5013972-5014005)
chr6 (202-236)||(595542-595576)
[»] chr8 (3 HSPs)
chr8 (202-254)||(28535190-28535242)
chr8 (202-251)||(29247177-29247226)
chr8 (196-228)||(11464465-11464497)
[»] chr5 (4 HSPs)
chr5 (193-248)||(424823-424878)
chr5 (195-248)||(18113827-18113880)
chr5 (206-248)||(25634446-25634488)
chr5 (202-251)||(34225676-34225725)
[»] chr3 (8 HSPs)
chr3 (202-253)||(26555474-26555525)
chr3 (203-254)||(22418550-22418601)
chr3 (202-248)||(2125267-2125313)
chr3 (202-248)||(28211742-28211788)
chr3 (202-251)||(498035-498084)
chr3 (11-44)||(26555669-26555702)
chr3 (202-235)||(43055608-43055641)
chr3 (202-251)||(50385857-50385906)
[»] chr4 (2 HSPs)
chr4 (202-254)||(2917958-2918010)
chr4 (196-251)||(8903207-8903262)


Alignment Details
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 254 - 323
Target Start/End: Original strand, 32710721 - 32710790
Alignment:
Q  254 ctcagctgagaaaatacaaaaagtttgaattattttcacttcatttaaacaaaataataggctaaatact 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32710721 ctcagctgagaaaatacaaaaagtttgaattattttcacttcatttaaacaaaataataggctaaatact 32710790  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 46437364 - 46437312
Alignment:
Q  193 ttaggctaaaatctggtgtggcagctgccacaccatgtttcactctacatccg 245  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||||||||||    
T  46437364 ttaggttataatcttgtgtggcagctgccacaccatgtttcactctacatccg 46437312  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 46437416 - 46437375
Alignment:
Q  134 ccaatttccactttccttcccgtgccttatgtttatgcatat 175  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  46437416 ccaatttccactttccttctcgtgccttatgtttatgcatat 46437375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 38663052 - 38663006
Alignment:
Q  202 aatctggtgtggcagctgccacaccatgtttcactctacatccgccc 248  Q
    |||||||||||||||||||||||||||||||||| |||  |||||||    
T  38663052 aatctggtgtggcagctgccacaccatgtttcacactaactccgccc 38663006  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 28998068 - 28998019
Alignment:
Q  203 atctggtgtggcagctgccacaccatgtttcactctacatccgcccctga 252  Q
    ||||||||||||| |||||||||||||||||||  || ||||||||||||    
T  28998068 atctggtgtggcaactgccacaccatgtttcacagtagatccgcccctga 28998019  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 46913464 - 46913515
Alignment:
Q  202 aatctggtgtggcagctgccacaccatgtttcactctacatccgcccctgat 253  Q
    |||||||||||||| |||||||||||||||||| | |  |||||||||||||    
T  46913464 aatctggtgtggcaactgccacaccatgtttcagtgtggatccgcccctgat 46913515  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 46437539 - 46437506
Alignment:
Q  11 gtgagaagaaagacgattgtgaattgtgatttgt 44  Q
    |||||||||||||||||||||||||||| |||||    
T  46437539 gtgagaagaaagacgattgtgaattgtgttttgt 46437506  T

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Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 134 - 251
Target Start/End: Original strand, 16916381 - 16916491
Alignment:
Q  134 ccaatttccactttccttcccgtgccttatgtttatgcatatgnnnnnnnnnnnnnnnnttaggctaaaatctggtgtggcagctgccacaccatgtttc 233  Q
    ||||||||||||||||||||||||||||||||||||||||||                 |||||||| |||||||||||||||||| |||||||||||||    
T  16916381 ccaatttccactttccttcccgtgccttatgtttatgcatat-------aaaaaaaaaattaggctagaatctggtgtggcagctgacacaccatgtttc 16916473  T
Q  234 actctacatccgcccctg 251  Q
    ||||||||||||||||||    
T  16916474 actctacatccgcccctg 16916491  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 16916258 - 16916291
Alignment:
Q  11 gtgagaagaaagacgattgtgaattgtgatttgt 44  Q
    ||||||||||||||||||||||||||||||||||    
T  16916258 gtgagaagaaagacgattgtgaattgtgatttgt 16916291  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 18431702 - 18431758
Alignment:
Q  193 ttaggctaaaatctggtgtggcagctgccacaccatgtttcactctacatccgcccc 249  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18431702 ttaggctagaatctggtgtggcagctgccacaccatgtttcactctacatccgcccc 18431758  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 22788449 - 22788508
Alignment:
Q  193 ttaggctaaaatctggtgtggcagctgccacaccatgtttcactctacatccgcccctga 252  Q
    |||||| | ||||||||||||||| |||||||||||||||||| || |||||||||||||    
T  22788449 ttaggcaagaatctggtgtggcagttgccacaccatgtttcacactccatccgcccctga 22788508  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 33403473 - 33403420
Alignment:
Q  202 aatctggtgtggcagctgccacaccatgtttcactctacatccgcccctgatct 255  Q
    |||||||||||||| |||||||||||||||||| | || |||||||||||||||    
T  33403473 aatctggtgtggcaactgccacaccatgtttcagtgtagatccgcccctgatct 33403420  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 18431649 - 18431689
Alignment:
Q  135 caatttccactttccttcccgtgccttatgtttatgcatat 175  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  18431649 caatttccactttccttcccgtaccttatgtttatgcatat 18431689  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 37187959 - 37187905
Alignment:
Q  203 atctggtgtggcagctgccacaccatgtttcactctacatccgcccctgatctca 257  Q
    ||||||||||||| |||||||||||||||||||  || ||||||||||| |||||    
T  37187959 atctggtgtggcaactgccacaccatgtttcacagtagatccgcccctggtctca 37187905  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 18431525 - 18431558
Alignment:
Q  11 gtgagaagaaagacgattgtgaattgtgatttgt 44  Q
    ||||||||||||||||||||||||||||||||||    
T  18431525 gtgagaagaaagacgattgtgaattgtgatttgt 18431558  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 6154642 - 6154697
Alignment:
Q  193 ttaggctaaaatctggtgtggcagctgccacaccatgtttcactctacatccgccc 248  Q
    |||||||| |||||||||| ||||||| ||||||||||||||   |||||||||||    
T  6154642 ttaggctagaatctggtgttgcagctgtcacaccatgtttcaacgtacatccgccc 6154697  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 7786800 - 7786846
Alignment:
Q  202 aatctggtgtggcagctgccacaccatgtttcactctacatccgccc 248  Q
    ||||||||||| |||||||||||||||||||||| |||  |||||||    
T  7786800 aatctggtgtgacagctgccacaccatgtttcacactaactccgccc 7786846  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 2123859 - 2123908
Alignment:
Q  202 aatctggtgtggcagctgccacaccatgtttcactctacatccgcccctg 251  Q
    |||||||||||||| |||||||||||||||||| | |  |||||||||||    
T  2123859 aatctggtgtggcaactgccacaccatgtttcagtgtggatccgcccctg 2123908  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 22788277 - 22788310
Alignment:
Q  11 gtgagaagaaagacgattgtgaattgtgatttgt 44  Q
    ||||||||||||| ||||||||||||||||||||    
T  22788277 gtgagaagaaagaagattgtgaattgtgatttgt 22788310  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 22788391 - 22788432
Alignment:
Q  134 ccaatttccactttccttcccgtgccttatgtttatgcatat 175  Q
    ||||||||||||||||||||| |||| ||||||||| |||||    
T  22788391 ccaatttccactttccttcccttgccatatgtttatacatat 22788432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 38741032 - 38740983
Alignment:
Q  202 aatctggtgtggcagctgccacaccatgtttcactctacatccgcccctg 251  Q
    |||||||||||||| |||||||||||||||||| | |  |||||||||||    
T  38741032 aatctggtgtggcaactgccacaccatgtttcagtgtggatccgcccctg 38740983  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 50158638 - 50158589
Alignment:
Q  202 aatctggtgtggcagctgccacaccatgtttcactctacatccgcccctg 251  Q
    |||||||||||||| |||||||||||||||||| | |  |||||||||||    
T  50158638 aatctggtgtggcaactgccacaccatgtttcagtgtggatccgcccctg 50158589  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 32940744 - 32940712
Alignment:
Q  202 aatctggtgtggcagctgccacaccatgtttca 234  Q
    |||||||||||||| ||||||||||||||||||    
T  32940744 aatctggtgtggcaactgccacaccatgtttca 32940712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 5014160 - 5014215
Alignment:
Q  193 ttaggctaaaatctggtgtggcagctgccacaccatgtttcactctacatccgccc 248  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  5014160 ttaggttagaatctggtgtggcagctgccacaccatgtttcactctacatccgccc 5014215  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 5014100 - 5014141
Alignment:
Q  134 ccaatttccactttccttcccgtgccttatgtttatgcatat 175  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  5014100 ccaatttccactttccttcccatgccttatgtttatgcatat 5014141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 16693081 - 16693040
Alignment:
Q  134 ccaatttccactttccttcccgtgccttatgtttatgcatat 175  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  16693081 ccaatttccactttccttcccttgccttatgtttatgcatat 16693040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 16693020 - 16692962
Alignment:
Q  193 ttaggctaaaatctggtgtggcagctgccacaccatgtttcactctacatccgcccctg 251  Q
    |||||| | ||||||||||||||||| |||||||||||||||| ||  |||||||||||    
T  16693020 ttaggcaagaatctggtgtggcagctaccacaccatgtttcacactcaatccgcccctg 16692962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 5013972 - 5014005
Alignment:
Q  11 gtgagaagaaagacgattgtgaattgtgatttgt 44  Q
    ||||||||||||||||||||||||||||||||||    
T  5013972 gtgagaagaaagacgattgtgaattgtgatttgt 5014005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 595576 - 595542
Alignment:
Q  202 aatctggtgtggcagctgccacaccatgtttcact 236  Q
    |||||||||||||| ||||||||||||||||||||    
T  595576 aatctggtgtggcaactgccacaccatgtttcact 595542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 28535242 - 28535190
Alignment:
Q  202 aatctggtgtggcagctgccacaccatgtttcactctacatccgcccctgatc 254  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  28535242 aatctggtgtggcagctgccacaccatgtttcacactccatccgcccctgatc 28535190  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 29247177 - 29247226
Alignment:
Q  202 aatctggtgtggcagctgccacaccatgtttcactctacatccgcccctg 251  Q
    |||||||||||||| |||||||||||||||||| | |  |||||||||||    
T  29247177 aatctggtgtggcaactgccacaccatgtttcagtgtggatccgcccctg 29247226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 11464465 - 11464497
Alignment:
Q  196 ggctaaaatctggtgtggcagctgccacaccat 228  Q
    ||||| |||||||||||||||||||||||||||    
T  11464465 ggctagaatctggtgtggcagctgccacaccat 11464497  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 424823 - 424878
Alignment:
Q  193 ttaggctaaaatctggtgtggcagctgccacaccatgtttcactctacatccgccc 248  Q
    |||||||| ||||||||||||||||||||||||||||||||| | |||||||||||    
T  424823 ttaggctagaatctggtgtggcagctgccacaccatgtttcaatgtacatccgccc 424878  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 18113827 - 18113880
Alignment:
Q  195 aggctaaaatctggtgtggcagctgccacaccatgtttcactctacatccgccc 248  Q
    |||||| |||||||||||||| |||||||||||||||||| | |||||||||||    
T  18113827 aggctagaatctggtgtggcaactgccacaccatgtttcaatgtacatccgccc 18113880  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 248
Target Start/End: Original strand, 25634446 - 25634488
Alignment:
Q  206 tggtgtggcagctgccacaccatgtttcactctacatccgccc 248  Q
    |||||||||||||||||||||||||||||| |||  |||||||    
T  25634446 tggtgtggcagctgccacaccatgtttcacactaactccgccc 25634488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 34225725 - 34225676
Alignment:
Q  202 aatctggtgtggcagctgccacaccatgtttcactctacatccgcccctg 251  Q
    |||||||||||||| |||||||||||||||||| | |  |||||||||||    
T  34225725 aatctggtgtggcaactgccacaccatgtttcagtgtggatccgcccctg 34225676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 26555525 - 26555474
Alignment:
Q  202 aatctggtgtggcagctgccacaccatgtttcactctacatccgcccctgat 253  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  26555525 aatctggtgtggcagctgccacaccatgtttcacactccatccgcccctgat 26555474  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 22418601 - 22418550
Alignment:
Q  203 atctggtgtggcagctgccacaccatgtttcactctacatccgcccctgatc 254  Q
    ||||||||||||| |||||||||||||||||||  || ||||||||||||||    
T  22418601 atctggtgtggcaactgccacaccatgtttcacagtagatccgcccctgatc 22418550  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 2125313 - 2125267
Alignment:
Q  202 aatctggtgtggcagctgccacaccatgtttcactctacatccgccc 248  Q
    |||||||||||||||||||||||||||||||||| |||  |||||||    
T  2125313 aatctggtgtggcagctgccacaccatgtttcacactaactccgccc 2125267  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 28211742 - 28211788
Alignment:
Q  202 aatctggtgtggcagctgccacaccatgtttcactctacatccgccc 248  Q
    |||||||||||||||||||||||||||||||||| |||  |||||||    
T  28211742 aatctggtgtggcagctgccacaccatgtttcacactaactccgccc 28211788  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 498035 - 498084
Alignment:
Q  202 aatctggtgtggcagctgccacaccatgtttcactctacatccgcccctg 251  Q
    |||||||||||||| |||||||||||||||||| | |  |||||||||||    
T  498035 aatctggtgtggcaactgccacaccatgtttcagtgtggatccgcccctg 498084  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 26555702 - 26555669
Alignment:
Q  11 gtgagaagaaagacgattgtgaattgtgatttgt 44  Q
    ||||||||||||| ||||||||||||||||||||    
T  26555702 gtgagaagaaagaagattgtgaattgtgatttgt 26555669  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 43055608 - 43055641
Alignment:
Q  202 aatctggtgtggcagctgccacaccatgtttcac 235  Q
    |||||||||||||| |||||||||||||||||||    
T  43055608 aatctggtgtggcaactgccacaccatgtttcac 43055641  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 50385906 - 50385857
Alignment:
Q  202 aatctggtgtggcagctgccacaccatgtttcactctacatccgcccctg 251  Q
    |||||||||||||| |||||||||||||||||| | |  |||||||||||    
T  50385906 aatctggtgtggcaactgccacaccatgtttcagtgtggatccgcccctg 50385857  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 2917958 - 2918010
Alignment:
Q  202 aatctggtgtggcagctgccacaccatgtttcactctacatccgcccctgatc 254  Q
    |||||||||||||| |||||||||||||||||| | |  ||||||||||||||    
T  2917958 aatctggtgtggcaactgccacaccatgtttcagtgtgaatccgcccctgatc 2918010  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 8903262 - 8903207
Alignment:
Q  196 ggctaaaatctggtgtggcagctgccacaccatgtttcactctacatccgcccctg 251  Q
    ||||| |||||||||||| ||||||||||||||| | || | ||||||||||||||    
T  8903262 ggctagaatctggtgtggtagctgccacaccatgctacaatgtacatccgcccctg 8903207  T

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