View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8030_high_2 (Length: 485)
Name: NF8030_high_2
Description: NF8030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8030_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 127 - 477
Target Start/End: Complemental strand, 45393781 - 45393433
Alignment:
| Q |
127 |
agtctgcactttgtatactgcaatcgagattttgctttatggaaatttaatttggattatctttcnnnnnnnncacaccatgtgcttatttgttttttgt |
226 |
Q |
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| T |
45393781 |
agtctgcactttgtatgctgcaatcgagattttgctttatggtaatt-aatttggattatctttcttttttt-cacaccatgtgcttatttgttttttgt |
45393684 |
T |
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| Q |
227 |
taatcctatcttttcctgtaaaattattaccgaggattaagatgtgtatgtttcaaattgattttacttgacgtctctaaatgttttgtggtattcatcc |
326 |
Q |
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| T |
45393683 |
taatcctatcttttcctgtaaaattattaccgaggattaagatatgtatgtttcaaattgattttacttgacgtctctaaatgttttgtggtattcatcc |
45393584 |
T |
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| Q |
327 |
annnnnnnaattatgtgatctggtatttgattgtagtcaacattggcggagtagaacaggttgttacaattgtaactccgtttataatccccaatatctt |
426 |
Q |
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| T |
45393583 |
atttttttaattatgtgatctggtatttgattgtagtcaacattggcggagtagaacaggttgttacaattgtaactccgtttataatccccaatatctt |
45393484 |
T |
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| Q |
427 |
agatcagtttcacaattagattggaataatagaagaacctctatgataaca |
477 |
Q |
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| T |
45393483 |
agatcagtttcacaattagattggaataatagaagaacctctatgataaca |
45393433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 45393891 - 45393861
Alignment:
| Q |
17 |
agaatagaattattagctatccatgaataaa |
47 |
Q |
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| T |
45393891 |
agaatagaattattagctatccatgaataaa |
45393861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 325
Target Start/End: Complemental strand, 52740194 - 52740103
Alignment:
| Q |
234 |
atcttttcctgtaaaattattaccgaggattaagatgtgtatgtttcaaattgattttacttgacgtctctaaatgttttgtggtattcatc |
325 |
Q |
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| T |
52740194 |
atcttttcctataaaattatttctgaggattaagatatgtatatttggaattgattctacacgacgtctccaaatgacatatggtattcatc |
52740103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 52740304 - 52740250
Alignment:
| Q |
129 |
tctgcactttgtatactgcaatcgagattttgctttatggaaatttaatttggat |
183 |
Q |
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| T |
52740304 |
tctgcactttttatactgcagttgagattttgtttaatggtaatttaatttggat |
52740250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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