View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8030_low_1 (Length: 713)
Name: NF8030_low_1
Description: NF8030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8030_low_1 |
 | |
|
| [»] scaffold0202 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 94 - 700
Target Start/End: Original strand, 4108064 - 4108646
Alignment:
| Q |
94 |
tatgtacatttatttcatcaatgttcctacatcaattatcatgagtaaaaaattctaccttacataacatcgttgctactataccaacacctcatacagt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4108064 |
tatgtacatttatttcatcaatgttcctacatgaattatcatgagtaaaaaattctaccttacataacatcgttgctactataccaacacctcatacagt |
4108163 |
T |
|
| Q |
194 |
atttcataaagtatcttatgaaataaaaagcccttataaacgcttatatcgtatctatacattttgtgggcatatagtattcataaacacgatatagtat |
293 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4108164 |
atttcataaagtatcttatgaaataaaa-gcccttataaacccttatatcgtatctatacattttgtgggcatata--------------------gtag |
4108242 |
T |
|
| Q |
294 |
tcataaacaccttctaaatatctacaattcctttcatagatatatagattccactgaagaaaccaacaaatcctgaaagagagaacatttctactttaac |
393 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4108243 |
tcataaacaccttctaaa-atctacaattcctttcattgatatatagattccactgaagaaaccaacaaatcctgaaagagagaacatttctactttagc |
4108341 |
T |
|
| Q |
394 |
ttatacatcaatgttataggatcacatcacttaacataatcaataaatacattaacagtatatacctg--aacaacattgtcagaggatttgagaacatc |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
4108342 |
ttatacatcaatgttataggatcacatcacttaacacaatcaata----cattaacagtatatacctgttaacaacagtgtcagaggatttgagaacatc |
4108437 |
T |
|
| Q |
492 |
accatcagcaacatcatcacccaaactaacatcctcttcatggacattcttctacaataaaagccaaaagaaatcagcgttcatccttagcttgtaaaat |
591 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4108438 |
accatcagcaacatcatcacccaaactaacatcctcttcatggacattcttctacaataaaagtcaaaagaaatcagcgttgatccttagcttgtaaaat |
4108537 |
T |
|
| Q |
592 |
atttaaagcaaaaagatatctttttaatcgacattaatcaaatcatagatgttgcctacaataccatcaaatatttatatttggtgcaaaatttgtctac |
691 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
4108538 |
acttaaagcaaacagatatctttttaatcgacattaatcaaatcatagatgttgcctataataccatcaaatatttatatttggtgcgaaacatgtctac |
4108637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 34779448 - 34779519
Alignment:
| Q |
1 |
ttctgagggctgaacctgtttgattgccatcttaaagtgcttcattgttacaacggaagcatcaaagctttc |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34779448 |
ttctgagggctgaacctgtttgattgccatcttaaagtgcttcattgttacaacggaagcatcaaagctttc |
34779519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 506 - 700
Target Start/End: Complemental strand, 8994904 - 8994709
Alignment:
| Q |
506 |
catcacccaaactaacatcctcttcatggacattcttctacaataaaagccaaaagaaatcagcgttcatcct-tagcttgtaaaatatttaaagcaaaa |
604 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||| | |||| | ||| |||| ||||| |
|
|
| T |
8994904 |
catcaaccaaactaacatcctcttcatggacattcttctacaataaaagtcagtagaaatcagcgttaatcctattacttgaattatacgtaaatcaaaa |
8994805 |
T |
|
| Q |
605 |
agat--atctttttaatcgacattaatcaaatcatagatgttgcctacaataccatcaaatatttatatttggtgcaaaatttgtctaccaacacagg |
700 |
Q |
| |
|
| || || |||| |||| ||||||| |||| ||||||| ||||| ||||||||||||| |||||||||||| ||| || |||||||||||||| |
|
|
| T |
8994804 |
a-atggattttttaaatcaacattaa-aaaattatagatgcagcctataataccatcaaatctttatatttggtctgaaacttttctaccaacacagg |
8994709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 285 - 360
Target Start/End: Complemental strand, 8996773 - 8996697
Alignment:
| Q |
285 |
atatagtattcataaacacctt-ctaaatatctacaattcctttcatagatatatagattccactgaagaaaccaac |
360 |
Q |
| |
|
||||| |||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||| | |||||||||| |
|
|
| T |
8996773 |
atataatattcacaaacacctttctaaatatctacaattcctttcatagatatgtagattccacagcagaaaccaac |
8996697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 34682929 - 34682858
Alignment:
| Q |
1 |
ttctgagggctgaacctgtttgattgccatcttaaagtgcttcattgttacaacggaagcatcaaagctttc |
72 |
Q |
| |
|
||||| ||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34682929 |
ttctgtgggctgaacttgttcaattgccgtcttaaagtgcttcattgttacaacggaagcatcaaagttttc |
34682858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 360 - 438
Target Start/End: Complemental strand, 8996214 - 8996136
Alignment:
| Q |
360 |
caaatcctgaaagagagaacatttctactttaacttatacatcaatgttataggatcacatcacttaacataatcaata |
438 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||| |||||||||||| || || |||||||||| |||||||| |
|
|
| T |
8996214 |
caaatcctgaaagagagaacatttctaccttagcttataagtcaatgttatagcataacgtcacttaacacaatcaata |
8996136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 5e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 451 - 577
Target Start/End: Original strand, 21413416 - 21413542
Alignment:
| Q |
451 |
gtatatacctgaacaacattgtcagaggatttgagaacatcaccatcagcaacatcatcacccaaactaacatcctcttcatggacattcttctacaata |
550 |
Q |
| |
|
|||||||||||||||| | |||| || ||||||||| || |||||||| | ||| ||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21413416 |
gtatatacctgaacaatagtgtcggatgatttgagagcaccaccatcaacgacaccatcaaccaaattaacatcctcttcatggacattcttctacaata |
21413515 |
T |
|
| Q |
551 |
aaagccaaaagaaatcagcgttcatcc |
577 |
Q |
| |
|
|||| | ||||||||||||| |||| |
|
|
| T |
21413516 |
aaagttagtagaaatcagcgttaatcc |
21413542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 285 - 359
Target Start/End: Original strand, 21411988 - 21412063
Alignment:
| Q |
285 |
atatagtattcataaacaccttctaaatatctacaat-tcctttcatagatatatagattccactgaagaaaccaa |
359 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| | | ||||||||| |||||||||| | ||||||||| |
|
|
| T |
21411988 |
atatagtattcacaaacaccttctaaatatctacaatcttaatacatagatatgtagattccacagcagaaaccaa |
21412063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 408
Target Start/End: Original strand, 21412553 - 21412601
Alignment:
| Q |
360 |
caaatcctgaaagagagaacatttctactttaacttatacatcaatgtt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||| |||||||| |
|
|
| T |
21412553 |
caaatcctgaaagagagaacatttctaccttagcttataagtcaatgtt |
21412601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 478 - 554
Target Start/End: Original strand, 49712174 - 49712250
Alignment:
| Q |
478 |
gatttgagaacatcaccatcagcaacatcatcacccaaactaacatcctcttcatggacattcttctacaataaaag |
554 |
Q |
| |
|
||||||||| || |||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49712174 |
gatttgagagcaccaccatcaacgacaccatcaaccaaactaacatcctcttcatggacattcttctacaataaaag |
49712250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 438
Target Start/End: Original strand, 20459 - 20535
Alignment:
| Q |
360 |
caaatcctgaaagagagaacatttctactttaacttatacatcaatgttataggatcacatcacttaacataatcaata |
438 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||| ||| ||||||| || || |||||||||| |||||||| |
|
|
| T |
20459 |
caaatcctgaaagagagaacatttctaccttagcttataagtca--gttatagcataacgtcacttaacacaatcaata |
20535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University