View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8030_low_12 (Length: 246)
Name: NF8030_low_12
Description: NF8030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8030_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 44714708 - 44714481
Alignment:
| Q |
1 |
ccgaatggcggaaaacatcctgataggaatatcggtaaatctgaaaccttctatgaatggaatgagcttccttacagtgcctacagaatctaacagcaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44714708 |
ccgaatggcggaaaacatcctgataggaatatcggtaaatctgaaaccttctatgaatggaatgagcttccttacagtgcctacagaatctaacagcaca |
44714609 |
T |
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| Q |
101 |
atctacacagaaagtattcttctcattagatcgaagatcacgatgatcatcacaatagccagagctactattcataagagctctaatccaatctctattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44714608 |
atctacacagaaagtattcttctcattagatcgaagatcacgatgatcatcacaatagccagagctactattcataagagctctaatccaatctctattc |
44714509 |
T |
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| Q |
201 |
ctttcctttggtgattgatccttcccca |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
44714508 |
ctttcctttggtgattgatccttcccca |
44714481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 59 - 185
Target Start/End: Original strand, 27386095 - 27386221
Alignment:
| Q |
59 |
ggaatgagcttccttacagtgcctacagaatctaacagcacaatctacacagaaagtattcttctcattagatcgaagatcacgatgatcatcacaatag |
158 |
Q |
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||||| |||||||||||| ||| |||| ||||||||| |||||||||||| |||| |||||||||||||||| ||| |||| |||||||||||||||| |
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| T |
27386095 |
ggaatcagcttccttacactgcttacaaaatctaacaaaacaatctacacataaaggattcttctcattagattgaacatcatgatgatcatcacaataa |
27386194 |
T |
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| Q |
159 |
ccagagctactattcataagagctcta |
185 |
Q |
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| T |
27386195 |
cctgagctactattcacaagagctcta |
27386221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 123 - 212
Target Start/End: Original strand, 5194666 - 5194755
Alignment:
| Q |
123 |
tcattagatcgaagatcacgatgatcatcacaatagccagagctactattcataagagctctaatccaatctctattcctttcctttggt |
212 |
Q |
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| T |
5194666 |
tcattagatcaaagatcatgataatcatcacattaaccagagctgctattcattagagctctaatccaatctctattcctttcctttggt |
5194755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 5194563 - 5194635
Alignment:
| Q |
3 |
gaatggcggaaaacatcctgataggaatatcggtaaatctgaaaccttctatgaatggaatgagcttccttac |
75 |
Q |
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|||| |||||| |||||||||||||||||| ||| |||| ||| ||||||||| ||||||||||||||||| |
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| T |
5194563 |
gaattgcggaatacatcctgataggaatatttgtatatcttaaagcttctatgacgggaatgagcttccttac |
5194635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 191
Target Start/End: Complemental strand, 28051890 - 28051797
Alignment:
| Q |
98 |
acaatctacacagaaagtattcttctcattagatcgaagatcacgatgatcatcacaatagccagagctactattcataagagctctaatccaa |
191 |
Q |
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|||||||||| |||||| ||||||||| |||||| |||||||| | | |||| ||||||| || ||||||||||||||||||||||||| |||| |
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| T |
28051890 |
acaatctacatagaaaggattcttctcgttagattgaagatcatgctaatcaacacaataacctgagctactattcataagagctctaacccaa |
28051797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 21686804 - 21686854
Alignment:
| Q |
122 |
ctcattagatcgaagatcacgatgatcatcacaatagccagagctactatt |
172 |
Q |
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|||||||||| |||||||| | |||||||||||||| || ||||||||||| |
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| T |
21686804 |
ctcattagattgaagatcatggtgatcatcacaataacctgagctactatt |
21686854 |
T |
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