View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8030_low_14 (Length: 231)

Name: NF8030_low_14
Description: NF8030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8030_low_14
NF8030_low_14
[»] chr3 (2 HSPs)
chr3 (23-214)||(51120269-51120460)
chr3 (79-113)||(51112886-51112920)
[»] chr5 (4 HSPs)
chr5 (80-124)||(41886292-41886336)
chr5 (84-126)||(41900191-41900233)
chr5 (177-208)||(28660967-28660998)
chr5 (84-122)||(32268880-32268918)
[»] chr2 (1 HSPs)
chr2 (79-126)||(45244521-45244568)
[»] chr4 (7 HSPs)
chr4 (84-122)||(566754-566792)
chr4 (87-122)||(1524000-1524035)
chr4 (79-126)||(1537246-1537293)
chr4 (84-126)||(1488824-1488866)
chr4 (84-125)||(12120920-12120961)
chr4 (90-126)||(554097-554133)
chr4 (70-126)||(645445-645501)
[»] chr1 (1 HSPs)
chr1 (70-126)||(9582031-9582087)
[»] chr6 (3 HSPs)
chr6 (79-126)||(9412450-9412497)
chr6 (85-125)||(6403935-6403975)
chr6 (85-125)||(6433172-6433212)
[»] chr8 (1 HSPs)
chr8 (84-126)||(17642614-17642656)
[»] chr7 (1 HSPs)
chr7 (84-121)||(10616209-10616246)


Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 51120269 - 51120460
Alignment:
Q  23 ttcccaacaacaattgttttcttcttccacaaaaacgacaacaattacagcagcatatttctatttacctgatgactgttgggaatgtgtcttcaaattc 122  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51120269 ttcccaacaacaattgttttcttcttccacaaaaacgacaaccattacagcagcatatttctatttacctgatgactgttgggaatgtgtcttcaaattc 51120368  T
Q  123 ctcacctatatggcaacggtaacatcagcaacagctacttgaaacgtctatccgttgtctcgaagcagttcctctctatcaccaaccttctc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51120369 ctcacctatatggcaacggtaacatcagcaacagctacttgaaacgtctatccgttgtctcgaagcagttcctctctatcaccaaccttctc 51120460  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 113
Target Start/End: Original strand, 51112886 - 51112920
Alignment:
Q  79 atttctatttacctgatgactgttgggaatgtgtc 113  Q
    |||||||||||||||||||||||||||||| ||||    
T  51112886 atttctatttacctgatgactgttgggaatatgtc 51112920  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 41886292 - 41886336
Alignment:
Q  80 tttctatttacctgatgactgttgggaatgtgtcttcaaattcct 124  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  41886292 tttctatttacctgatgagtgttgggaatgtgtcttcaaattcct 41886336  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 41900191 - 41900233
Alignment:
Q  84 tatttacctgatgactgttgggaatgtgtcttcaaattcctca 126  Q
    |||||||| ||||| ||||||||||||||||||||||||||||    
T  41900191 tatttaccagatgagtgttgggaatgtgtcttcaaattcctca 41900233  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 208
Target Start/End: Original strand, 28660967 - 28660998
Alignment:
Q  177 ttgtctcgaagcagttcctctctatcaccaac 208  Q
    ||||||||||||||||||||||||||||||||    
T  28660967 ttgtctcgaagcagttcctctctatcaccaac 28660998  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 122
Target Start/End: Complemental strand, 32268918 - 32268880
Alignment:
Q  84 tatttacctgatgactgttgggaatgtgtcttcaaattc 122  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  32268918 tatttaccagatgagtgttgggaatgtgtcttcaaattc 32268880  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 45244521 - 45244568
Alignment:
Q  79 atttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 126  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  45244521 atttctatttacctgatgagtgttgggaatgtgtcttgaaattcctca 45244568  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 122
Target Start/End: Complemental strand, 566792 - 566754
Alignment:
Q  84 tatttacctgatgactgttgggaatgtgtcttcaaattc 122  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  566792 tatttacctgatgactgttgggaacgtgtcttcaaattc 566754  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 1524000 - 1524035
Alignment:
Q  87 ttacctgatgactgttgggaatgtgtcttcaaattc 122  Q
    |||||||||||||||||||||| |||||||||||||    
T  1524000 ttacctgatgactgttgggaatctgtcttcaaattc 1524035  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 1537246 - 1537293
Alignment:
Q  79 atttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 126  Q
    |||| |||||||||||||| |||||||||||||| |||| ||||||||    
T  1537246 atttatatttacctgatgagtgttgggaatgtgtattcagattcctca 1537293  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 1488824 - 1488866
Alignment:
Q  84 tatttacctgatgactgttgggaatgtgtcttcaaattcctca 126  Q
    |||||||||||||| || |||||||||||| ||||||||||||    
T  1488824 tatttacctgatgagtgctgggaatgtgtcgtcaaattcctca 1488866  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 125
Target Start/End: Original strand, 12120920 - 12120961
Alignment:
Q  84 tatttacctgatgactgttgggaatgtgtcttcaaattcctc 125  Q
    |||||||||||||| ||||||||||||||| ||| |||||||    
T  12120920 tatttacctgatgagtgttgggaatgtgtcatcagattcctc 12120961  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 554133 - 554097
Alignment:
Q  90 cctgatgactgttgggaatgtgtcttcaaattcctca 126  Q
    |||||||| |||||||||| |||||||||||||||||    
T  554133 cctgatgaatgttgggaatttgtcttcaaattcctca 554097  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 645501 - 645445
Alignment:
Q  70 cagcagcatatttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 126  Q
    |||| ||| |||| ||||||||| |||| ||||||| ||||||||||| ||||||||    
T  645501 cagctgcagatttttatttaccttatgattgttgggtatgtgtcttcagattcctca 645445  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 9582087 - 9582031
Alignment:
Q  70 cagcagcatatttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 126  Q
    ||||| || |||| ||||||||| |||||||||||||||  ||||||||||||||||    
T  9582087 cagcaacagatttttatttacctaatgactgttgggaatccgtcttcaaattcctca 9582031  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 9412497 - 9412450
Alignment:
Q  79 atttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 126  Q
    |||| |||||||||||||| ||||||||| || |||||||||||||||    
T  9412497 atttttatttacctgatgaatgttgggaaagtatcttcaaattcctca 9412450  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 6403975 - 6403935
Alignment:
Q  85 atttacctgatgactgttgggaatgtgtcttcaaattcctc 125  Q
    |||| ||||||||||| |||||||| |||||||||||||||    
T  6403975 atttgcctgatgactgatgggaatgcgtcttcaaattcctc 6403935  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 6433212 - 6433172
Alignment:
Q  85 atttacctgatgactgttgggaatgtgtcttcaaattcctc 125  Q
    |||||||||||||||||||||||||  |||||| |||||||    
T  6433212 atttacctgatgactgttgggaatgcatcttcagattcctc 6433172  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 17642614 - 17642656
Alignment:
Q  84 tatttacctgatgactgttgggaatgtgtcttcaaattcctca 126  Q
    |||||||||||||| |||||||| | |||||||||||||||||    
T  17642614 tatttacctgatgagtgttgggagtctgtcttcaaattcctca 17642656  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 10616246 - 10616209
Alignment:
Q  84 tatttacctgatgactgttgggaatgtgtcttcaaatt 121  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  10616246 tatttacctgatgagtgttgggaatgtatcttcaaatt 10616209  T

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