View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8030_low_15 (Length: 217)
Name: NF8030_low_15
Description: NF8030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8030_low_15 |
 | |
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| [»] chr4 (6 HSPs) |
| |
|
| [»] chr8 (3 HSPs) |
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| [»] chr1 (2 HSPs) |
| |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 28607315 - 28607117
Alignment:
| Q |
19 |
tgaatgccatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcagtggaattgaaggaaagcatt |
118 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
28607315 |
tgaatgtcatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcaatggaattgaaggaaagcatc |
28607216 |
T |
|
| Q |
119 |
gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatacagagagtgtgggaaaaatacacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28607215 |
gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
28607117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 28612077 - 28611879
Alignment:
| Q |
19 |
tgaatgccatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcagtggaattgaaggaaagcatt |
118 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28612077 |
tgaatgtcatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcaatggaattgaaggaaagcatc |
28611978 |
T |
|
| Q |
119 |
gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatacagagagtgtgggaaaaatacacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28611977 |
gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
28611879 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 118 - 217
Target Start/End: Original strand, 14178646 - 14178745
Alignment:
| Q |
118 |
tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatacagagagtgtgggaaaaatacacc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14178646 |
tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
14178745 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 118 - 217
Target Start/End: Original strand, 14173892 - 14173991
Alignment:
| Q |
118 |
tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatacagagagtgtgggaaaaatacacc |
217 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14173892 |
tgaagcagaagtgaaaatacaaagtttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
14173991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 44161538 - 44161640
Alignment:
| Q |
114 |
gcattgaagcagaagtgaaaat-acaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatacagagagtgtgggaaaaat |
212 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44161538 |
gcatcgaagcagaagtgaaaaacacaaagcttctgtgtgt--agaggtgtgtgagaggaataatagagtgttgagtaaatccagagagtgtgggaaaaat |
44161635 |
T |
|
| Q |
213 |
acacc |
217 |
Q |
| |
|
||||| |
|
|
| T |
44161636 |
acacc |
44161640 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 11104424 - 11104523
Alignment:
| Q |
115 |
cattgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatacagagagtgtgggaaaaatac |
214 |
Q |
| |
|
||||||||||||||| ||| |||||||||||| |||| |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
11104424 |
cattgaagcagaagtcaaa-tacaaagcttctatgtg--tagaagtgtgtgagagaaaaaatagagtgttgagtaaatccagagagtgtaggaaaaatac |
11104520 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 28 - 215
Target Start/End: Complemental strand, 37040927 - 37040739
Alignment:
| Q |
28 |
tgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggct-catttcccctataaatagaggcagtggaattgaaggaaagcattgaagcaga |
126 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||| || || | |||||||||||||||||||||| |
|
|
| T |
37040927 |
tgacttttagtgtaagagtgtgtgaaccaaatccaactcttacggcttcatttctcttataaatagagacaatgatagtgaaggaaagcattgaagcaga |
37040828 |
T |
|
| Q |
127 |
agtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatacagagagtgtgggaaaaataca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37040827 |
agtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaataca |
37040739 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 15302891 - 15302960
Alignment:
| Q |
110 |
gaaagcattgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaataga |
179 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15302891 |
gaaagcatcgaagcagaattgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagagcaaaaataga |
15302960 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 116 - 198
Target Start/End: Original strand, 12098958 - 12099038
Alignment:
| Q |
116 |
attgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatacagag |
198 |
Q |
| |
|
||||||| |||||||||| ||||||| || |||| ||||||||| ||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
12098958 |
attgaagtagaagtgaaactacaaagtttttgtg--tgtagaagtatgtgaaaggaaaaatagagtgttgagtaaattcagag |
12099038 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 217
Target Start/End: Original strand, 15290184 - 15290285
Alignment:
| Q |
110 |
gaaagcattgaagcagaagtgaaaatac---aaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatacagagagtgtggg |
206 |
Q |
| |
|
|||||||| | ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| ||||| |||| ||||| || |
|
|
| T |
15290184 |
gaaagcatcgtagcagaagtgaaaatacaaaaaagcttc--tgtgtgtagaagtgtgtgag------aatagagtgttgactaaatccagaaagtgt-gg |
15290274 |
T |
|
| Q |
207 |
aaaaatacacc |
217 |
Q |
| |
|
||||||||||| |
|
|
| T |
15290275 |
aaaaatacacc |
15290285 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 8539041 - 8539235
Alignment:
| Q |
19 |
tgaatgccatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcagtggaattgaaggaaagcatt |
118 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||| | ||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8539041 |
tgaatgtcatgacttttggtgtaagag-gtgtgaactatttccaactcttatggcttatttcccctataaatagaggca-tggaattgaaggaaagcatc |
8539138 |
T |
|
| Q |
119 |
gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatacagagagtgtgggaaaaataca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
8539139 |
gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatatagtgttcagtaaattcagagagtgtgggaaaaataca |
8539235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 116 - 217
Target Start/End: Original strand, 12930629 - 12930730
Alignment:
| Q |
116 |
attgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatacagagagtgtgggaaaaataca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12930629 |
attgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaataca |
12930728 |
T |
|
| Q |
216 |
cc |
217 |
Q |
| |
|
|| |
|
|
| T |
12930729 |
cc |
12930730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 116 - 217
Target Start/End: Original strand, 12935375 - 12935476
Alignment:
| Q |
116 |
attgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatacagagagtgtgggaaaaataca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12935375 |
attgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaataca |
12935474 |
T |
|
| Q |
216 |
cc |
217 |
Q |
| |
|
|| |
|
|
| T |
12935475 |
cc |
12935476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 17124041 - 17124144
Alignment:
| Q |
27 |
atgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcagtggaattgaaggaaagcattgaagcaga |
126 |
Q |
| |
|
|||||||||||||||||| | ||||||| || || ||||||||||||| ||| | ||||||||||| || ||| | ||||||||||||| |||| ||| |
|
|
| T |
17124041 |
atgacttttggtgtaagaat-tgtgaactaattcaaactcttacggcttgttttct-tataaatagagtcaatggcaatgaaggaaagcatcgaagtaga |
17124138 |
T |
|
| Q |
127 |
agtgaa |
132 |
Q |
| |
|
| |||| |
|
|
| T |
17124139 |
aatgaa |
17124144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 116 - 217
Target Start/End: Original strand, 34907092 - 34907193
Alignment:
| Q |
116 |
attgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatacagagagtgtgggaaaaataca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34907092 |
attgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaataca |
34907191 |
T |
|
| Q |
216 |
cc |
217 |
Q |
| |
|
|| |
|
|
| T |
34907192 |
cc |
34907193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 34906962 - 34907056
Alignment:
| Q |
19 |
tgaatgccatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcagtggaattgaaggaaa |
113 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||| |
|
|
| T |
34906962 |
tgaatgtcatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcaatagaattgaaagaaa |
34907056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 110 - 216
Target Start/End: Complemental strand, 42911408 - 42911301
Alignment:
| Q |
110 |
gaaagcattgaagcagaagtgaaaat-acaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatacagagagtgtgggaa |
208 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| || |
|
|
| T |
42911408 |
gaaagcatcgaagcagaagtgaaaaacacaaagcttctgtgtgtgtagaagtgtgtgagagaaaaaatagagtgttgagtaaatccagagagtgtggaaa |
42911309 |
T |
|
| Q |
209 |
aaatacac |
216 |
Q |
| |
|
|||||||| |
|
|
| T |
42911308 |
aaatacac |
42911301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 110 - 215
Target Start/End: Complemental strand, 29107291 - 29107188
Alignment:
| Q |
110 |
gaaagcattgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatacagagagtgtgggaaa |
209 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||| ||| |||||||||||||||||| |||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
29107291 |
gaaagcatcgaagcagaagtggaaatacaaagcttctctgtatgtagaagtgtgtgagagaaaaaat--agtgttgagtaaatccagagagtgtgggaaa |
29107194 |
T |
|
| Q |
210 |
aataca |
215 |
Q |
| |
|
|||||| |
|
|
| T |
29107193 |
aataca |
29107188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 51302118 - 51302215
Alignment:
| Q |
120 |
aagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatacagagagtgtgggaaaaatacacc |
217 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||| |||||||||| |
|
|
| T |
51302118 |
aagcataagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgtgaggaaaaatagagtattgagtaaatccagagagtgtggataaaatacacc |
51302215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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