View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8030_low_2 (Length: 582)

Name: NF8030_low_2
Description: NF8030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8030_low_2
NF8030_low_2
[»] chr4 (12 HSPs)
chr4 (251-408)||(26982154-26982309)
chr4 (94-211)||(34492309-34492427)
chr4 (220-361)||(48205432-48205574)
chr4 (98-202)||(34496904-34497008)
chr4 (94-190)||(34493375-34493472)
chr4 (491-561)||(34493035-34493105)
chr4 (98-171)||(34482089-34482162)
chr4 (273-325)||(26999132-26999184)
chr4 (122-195)||(34488888-34488962)
chr4 (236-277)||(34492627-34492668)
chr4 (446-520)||(48205299-48205377)
chr4 (273-321)||(26985057-26985105)


Alignment Details
Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 251 - 408
Target Start/End: Complemental strand, 26982309 - 26982154
Alignment:
Q  251 gccaatgattctattataaagat-gtgtgaagaatcttcactttgagagctgggaagagaaagaggaagcagcaaaggatattgaaatgttggctaaaca 349  Q
    |||||||||| ||||  |||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||    
T  26982309 gccaatgattgtattgcaaagattgtgtgaagaagcttcactttgggagctgggaagagaaagaggaagcagcaaaagatattgagatgctggctaaaca 26982210  T
Q  350 agttgtcaaggtcacaccaaagttgatgactgaacttggggtggtgcctgtgttggtat 408  Q
    || ||| |||||||    ||||||||||||||||||| ||||||||||||| |||||||    
T  26982209 agatgttaaggtca---gaaagttgatgactgaacttcgggtggtgcctgtattggtat 26982154  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 94 - 211
Target Start/End: Original strand, 34492309 - 34492427
Alignment:
Q  94 taagaaggctttgcgtgcttctcgtacctttgaacgatgtgggacttccctctgctgcaaaaacaacactcagtttgcaact-aaatctaaatctgttgg 192  Q
    |||||||||||||  |||||| | ||||||||||||||||||||||||||| | |||| |||||||| |||||||||||||| || || |||| ||||||    
T  34492309 taagaaggctttgtatgcttcccatacctttgaacgatgtgggacttccctgtcctgctaaaacaaccctcagtttgcaactgaagtccaaatttgttgg 34492408  T
Q  193 aactgagacacaagcaact 211  Q
    |||||||||||||||||||    
T  34492409 aactgagacacaagcaact 34492427  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 220 - 361
Target Start/End: Complemental strand, 48205574 - 48205432
Alignment:
Q  220 tggagaagcatattagtgataaggaggagaagccaatgattctattataaagatgtgtgaagaatcttcactttgagagctgggaagagaaagaggaagc 319  Q
    ||||||||||| ||||||||||||||   |||||||||||||||||  ||||| |||||||||| |||||||||| |||||||||||||||| | | |||    
T  48205574 tggagaagcatgttagtgataaggag---aagccaatgattctattgcaaagaagtgtgaagaagcttcactttgggagctgggaagagaaacaagcagc 48205478  T
Q  320 ----agcaaaggatattgaaatgttggctaaacaagttgtcaaggt 361  Q
        ||||||||||| |||||||||||||||| ||| |||||||||    
T  48205477 agcgagcaaaggatactgaaatgttggctaaagaagatgtcaaggt 48205432  T

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Target: chr4; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 98 - 202
Target Start/End: Original strand, 34496904 - 34497008
Alignment:
Q  98 aaggctttgcgtgcttctcgtacctttgaacgatgtgggacttccctctgctgcaaaaacaacactcagtttgcaactaaatctaaatctgttggaactg 197  Q
    ||||||||||||||||| | ||| ||||||||||||||||||| ||| ||||||||||||||||| ||| ||| |||||| ||||||| |||||||| ||    
T  34496904 aaggctttgcgtgcttcccatacttttgaacgatgtgggacttgcctgtgctgcaaaaacaacacccagattgaaactaactctaaatttgttggaattg 34497003  T
Q  198 agaca 202  Q
    |||||    
T  34497004 agaca 34497008  T

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Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 34493375 - 34493472
Alignment:
Q  94 taagaaggctttgcgtgcttctcgtacctttgaacgatgtgggacttccctctgctgcaaaaacaacactcagtttgcaactaaa-tctaaatctgtt 190  Q
    ||||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||| ||||||| ||||    
T  34493375 taagaaggctttgcgtgcttcccttacttttgaacgatgtgggacttccctgtgctgcaaaaacaatactcagtttgaaaccaaagtctaaatttgtt 34493472  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 491 - 561
Target Start/End: Original strand, 34493035 - 34493105
Alignment:
Q  491 atttcttatactctttgttcattttgctatatatatgcatctctttgtacaccattgcacttaaatataag 561  Q
    ||||| ||| || ||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||    
T  34493035 atttcatatgctttttgttcattttgccttatatatgcatctctttgtacaccattgcacttcaatataag 34493105  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 34482089 - 34482162
Alignment:
Q  98 aaggctttgcgtgcttctcgtacctttgaacgatgtgggacttccctctgctgcaaaaacaacactcagtttgc 171  Q
    ||||||||| ||||||| | ||| ||||||||||||||||||||||| |  |||||||||||||||||||||||    
T  34482089 aaggctttgagtgcttcccatacttttgaacgatgtgggacttccctgtattgcaaaaacaacactcagtttgc 34482162  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 26999132 - 26999184
Alignment:
Q  273 tgtgtgaagaatcttcactttgagagctgggaagagaaagaggaagcagcaaa 325  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  26999132 tgtgtgaagaagcttcactttgggagctgggaagagaaagaggaagcagcaaa 26999184  T

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Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 34488888 - 34488962
Alignment:
Q  122 tttgaacgatgtgggacttccctctgctgcaaaaacaacactcagtttgcaactaaa-tctaaatctgttggaac 195  Q
    ||||||||||||||||||||||| || | |||||||||||| ||||||| ||| ||| |||||||||||||||||    
T  34488888 tttgaacgatgtgggacttccctgtgttccaaaaacaacacccagtttgaaaccaaagtctaaatctgttggaac 34488962  T

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Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 34492627 - 34492668
Alignment:
Q  236 tgataaggaggagaagccaatgattctattataaagatgtgt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  34492627 tgataaggaggagaagccaatgattctattataaagatgtgt 34492668  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 446 - 520
Target Start/End: Complemental strand, 48205377 - 48205299
Alignment:
Q  446 aagctttgatccagttagctcatggaagttacatgtaa----gtttcagatttcttatactctttgttcattttgctat 520  Q
    |||||||||||||| ||||| |||||||||||||||||    ||||||||||||||||  | ||||||||||| |||||    
T  48205377 aagctttgatccagctagctaatggaagttacatgtaattatgtttcagatttcttatgttttttgttcatttggctat 48205299  T

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Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 26985057 - 26985105
Alignment:
Q  273 tgtgtgaagaatcttcactttgagagctgggaagagaaagaggaagcag 321  Q
    ||||||||||| |||||||||| ||||||||||| ||||||||||||||    
T  26985057 tgtgtgaagaagcttcactttgggagctgggaagtgaaagaggaagcag 26985105  T

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