View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8030_low_6 (Length: 297)
Name: NF8030_low_6
Description: NF8030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8030_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 31594553 - 31594697
Alignment:
| Q |
1 |
actaatcggtaagtataatgatttttctcatatacgatttatataatattgaaaagtgaaggagatgagatgagaaaggagtagagatagaaagaatcga |
100 |
Q |
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| T |
31594553 |
actaatcggtaagtataatgatttttctcatatacgatttatataatattgaaaagtgaaggagatgagatgagaaaggagtagagataaaaagaaacga |
31594652 |
T |
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| Q |
101 |
gtgtgaaattgtaagagaaagaaacataagaattttaatgtgtac |
145 |
Q |
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| T |
31594653 |
gtgtgaaattgtaagagaaagaaacataagaatttcaatgtgtac |
31594697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 31594751 - 31594825
Alignment:
| Q |
207 |
cgtttggattgtgtaagagcgtttgtatgtttatgatgaggattgaagattttattcttagtttcgtcaattttg |
281 |
Q |
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| T |
31594751 |
cgtttggattgtgtaagagcgattgtatgtttatgatgaggattgaagattttattcttaatttcgtcaattttg |
31594825 |
T |
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