View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8031_high_3 (Length: 421)
Name: NF8031_high_3
Description: NF8031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8031_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 72 - 409
Target Start/End: Complemental strand, 30034106 - 30033770
Alignment:
| Q |
72 |
aaatcaatatatcaaagaataatacaacccgtgtatagtaaaaatcacaactaaactattatcatcttcacagaccttccaccatttccatgtcaaacat |
171 |
Q |
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| T |
30034106 |
aaatcaatatatcaaagaataatacaacccgtgtacagtaaaaatcacaactaaaccattatcatcttcacagaccttccaccatttccatctcaaacat |
30034007 |
T |
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| Q |
172 |
tcttttaattaatcaatgagataagacgatggactctaaatgcattgtgtttgacgtatgaaatacttcttattttcatttgttaattaacgtgaaaaat |
271 |
Q |
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| T |
30034006 |
tcttttaattactcaatgagataagacgatggactctaaatgcattgtgtttgatgtatgaaatacttcttattttcatttgttaattaacgtg-aaaat |
30033908 |
T |
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| Q |
272 |
attgataggaggtatctaattaaaattcgagagaagcctgatgcctaaattaaattcataactttgttcgaaataattagataaatttgctcctaatagt |
371 |
Q |
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| T |
30033907 |
attgataggaggtatctaattaaaattcgagagaagcttgatgcctaaattaaattcagaactttgttccaaataattagataaatttgctcctaatagt |
30033808 |
T |
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| Q |
372 |
tactcttcctccaacaatggaggtggttgtgattgtga |
409 |
Q |
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| T |
30033807 |
tactcttcctccaacaatggaggtggttgtgattgtga |
30033770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 30034534 - 30034473
Alignment:
| Q |
20 |
gaatgcacgtgcaaaaacttatctccctctcccacgtgctggt-ttttattaaaaatcaata |
80 |
Q |
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| T |
30034534 |
gaatgcacgtgcaaaaacttatctccctctcccacatgctggttttttattaaaaatcaata |
30034473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 70 - 407
Target Start/End: Original strand, 23147129 - 23147477
Alignment:
| Q |
70 |
aaaaatcaatatatcaaagaataatacaacccgtgtatagtaaaaatcacaactaaactattatcatcttcacagaccttccaccatttccatgtcaaac |
169 |
Q |
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|||||| ||||||||||||||||||||||||| |||| | ||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23147129 |
aaaaattaatatatcaaagaataatacaacccatgtacaataaaaatcacatctaaagcattttcatcttcacagaccttccaccatttccatgtcaaac |
23147228 |
T |
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| Q |
170 |
attcttttaattaatcaatgagataagacgatggactctaaatgcattgtgtttgacgtatgaaatac--------ttcttattttcatttgttaat--- |
258 |
Q |
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| T |
23147229 |
attcttttaattactcaatgacataagaagattgactctaaatgcattgtgtttgatgtatgaaatacccaacgtgttcttattttcatttgttaataat |
23147328 |
T |
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| Q |
259 |
taacgtgaaaaatattgataggaggtatctaattaaaattcgagagaagcctgatgcctaaattaaattcataactttgttcgaaataattagataaatt |
358 |
Q |
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| T |
23147329 |
taacgtgaaaaatattgatatgaggtatctaattaaaattcgagagaagcttgatgcctaaattaaattcataactttgttccatataattagataaatt |
23147428 |
T |
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| Q |
359 |
tgctcctaatagttactcttcctccaacaatggaggtggttgtgattgt |
407 |
Q |
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| T |
23147429 |
tgcccctaatagttactcttcctccaacaatggaggcggttgtgattgt |
23147477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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