View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8031_high_4 (Length: 397)
Name: NF8031_high_4
Description: NF8031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8031_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 63 - 379
Target Start/End: Complemental strand, 40971876 - 40971565
Alignment:
| Q |
63 |
aataaggattaaaaggggtggtgtattacattacaataattaacaaattattacctccattgagccaaagggtgagaggctttttgtgagggtcatgatc |
162 |
Q |
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| T |
40971876 |
aataaggattaaaaggggtggtgtattaca-----ataattaacaaattattacctccattgagccaaagggtgagaggctttttgtgagggtcatgatc |
40971782 |
T |
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| Q |
163 |
agcctcaacaaaataatagaagaggcttctcccatgccttacatctatatcaatatagccagcatattgtttgaattcaaccttaggttggcctggcaac |
262 |
Q |
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| T |
40971781 |
agcctcaacaaaataatagaagaggcttctcccatgccttacatctatatcaatatagccagcatattgtttgaattcaaccttaggttggcctggcaac |
40971682 |
T |
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| Q |
263 |
ttcacaatgaaatcttcaattgggtacccttctaccctaataggtgtctcaaggaagcacccataacccaccacaatcaacacccnnnnnnnccaagact |
362 |
Q |
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| T |
40971681 |
ttcacaatgaaatcttcaattgggtacccttctaccctaataggtgtctcaaggaagcacccataacccaccacaatcaacacccaaaaaaaccaagact |
40971582 |
T |
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| Q |
363 |
taaccattctaataact |
379 |
Q |
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| T |
40971581 |
taaccattctaataact |
40971565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 109 - 298
Target Start/End: Original strand, 40961897 - 40962086
Alignment:
| Q |
109 |
attattacctccattgagccaaagggtgagaggctttttgtgagggtcatgatcagcctcaacaaaataatagaagaggcttctcccatgccttacatct |
208 |
Q |
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| T |
40961897 |
attattacctccattgagccatagggtgagaggctttttgtgagggagatggtcagcctcaacaaaataatagaagagactcctcccatgttttatatct |
40961996 |
T |
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| Q |
209 |
atatcaatatagccagcatattgtttgaattcaaccttaggttggcctggcaacttcacaatgaaatcttcaattgggtacccttctacc |
298 |
Q |
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| T |
40961997 |
atatcaacataaccagcatattgactgaatttaactttgggttggcctggtagcttcacaactagatcttcaattgggtacccttctacc |
40962086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 40971940 - 40971900
Alignment:
| Q |
13 |
tcattcaagtgtcaactgttagaaaagccatagtaatagaa |
53 |
Q |
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| T |
40971940 |
tcattcaagtgtcaactgttagaaaagccatagtaatagaa |
40971900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 113 - 258
Target Start/End: Original strand, 30906864 - 30907009
Alignment:
| Q |
113 |
ttacctccattgagccaaagggtgagaggctttttgtgagggtcatgatcagcctcaacaaaataatagaagaggcttctcccatgccttacatctatat |
212 |
Q |
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|||||||||||||||||||| ||||| || || || ||||| | ||||||||| |||||||||||||| || | |||||| ||||| ||||||| |||| |
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| T |
30906864 |
ttacctccattgagccaaagagtgaggggtttattttgaggtttatgatcagcttcaacaaaataataaaacaagcttctaccatgttttacatcaatat |
30906963 |
T |
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| Q |
213 |
caatatagccagcatattgtttgaattcaaccttaggttggcctgg |
258 |
Q |
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| T |
30906964 |
caacataaccagcatattgactgaattcaactttaggttgacctgg |
30907009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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