View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8031_low_10 (Length: 278)

Name: NF8031_low_10
Description: NF8031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8031_low_10
NF8031_low_10
[»] chr3 (44 HSPs)
chr3 (1-278)||(28151004-28151281)
chr3 (28-265)||(28003272-28003512)
chr3 (28-278)||(27979544-27979794)
chr3 (28-179)||(27919515-27919666)
chr3 (28-169)||(28036614-28036755)
chr3 (84-233)||(11420146-11420295)
chr3 (82-224)||(28184908-28185050)
chr3 (89-226)||(28149039-28149176)
chr3 (81-169)||(17745306-17745394)
chr3 (81-169)||(19046626-19046714)
chr3 (95-215)||(28509770-28509890)
chr3 (95-169)||(26114053-26114127)
chr3 (99-215)||(28480591-28480707)
chr3 (82-214)||(28082856-28082988)
chr3 (28-79)||(27459625-27459676)
chr3 (95-165)||(26128809-26128879)
chr3 (137-226)||(28134742-28134831)
chr3 (110-166)||(27459738-27459794)
chr3 (82-169)||(28054572-28054659)
chr3 (82-169)||(28064997-28065084)
chr3 (29-79)||(18025265-18025315)
chr3 (28-76)||(8539835-8539883)
chr3 (28-79)||(27390833-27390884)
chr3 (46-79)||(11420332-11420365)
chr3 (28-77)||(28005112-28005161)
chr3 (121-169)||(26202529-26202577)
chr3 (37-76)||(18077341-18077380)
chr3 (28-79)||(19476136-19476187)
chr3 (28-79)||(26179558-26179609)
chr3 (28-75)||(26235989-26236036)
chr3 (28-79)||(27377540-27377591)
chr3 (45-79)||(26111203-26111237)
chr3 (45-79)||(26205486-26205520)
chr3 (45-79)||(26233549-26233583)
chr3 (31-76)||(26128207-26128252)
chr3 (38-79)||(26129518-26129559)
chr3 (31-76)||(26178257-26178302)
chr3 (98-154)||(26111550-26111606)
chr3 (28-76)||(26202091-26202139)
chr3 (98-154)||(26205834-26205890)
chr3 (98-154)||(26233879-26233935)
chr3 (193-233)||(27459806-27459846)
chr3 (197-233)||(27919476-27919512)
chr3 (144-224)||(28160356-28160436)
[»] chr7 (1 HSPs)
chr7 (82-224)||(8692895-8693037)
[»] scaffold0257 (1 HSPs)
scaffold0257 (89-226)||(18459-18596)
[»] scaffold1142 (2 HSPs)
scaffold1142 (28-79)||(1332-1383)
scaffold1142 (95-169)||(1208-1286)
[»] scaffold0043 (1 HSPs)
scaffold0043 (28-79)||(53891-53942)
[»] chr2 (1 HSPs)
chr2 (28-79)||(22392469-22392520)


Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 28151281 - 28151004
Alignment:
Q  1 aagaaaatggtcgacaaagttgatgcttccaactgattgcataacatgaaaatgtaaattagttgcaacatatttttaacgtttcttttttagatttata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28151281 aagaaaatggtcgacaaagttgatgcttccaactgattgcataacatgaaaatgtaaattagttgcaacatatttttaacgtttcttttttagatttata 28151182  T
Q  101 tgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcaatttctccacgtagacgtttttgctccatttcttgttcat 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28151181 tgcacaatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcaatttctccacgtagacgtttttgctccatttcttgttcat 28151082  T
Q  201 tcatcaactcctgtagtaagaacatatgaattatttcattactagactaatattgaatatgtatatatttggagagga 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28151081 tcatcaactcctgtagtaagaacatatgaattatttcattactagactaatattgaatatgtatatatttggagagga 28151004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 28 - 265
Target Start/End: Complemental strand, 28003512 - 28003272
Alignment:
Q  28 tccaactgattgcataacatgaaaatgtaaattagttgcaacatatttttaacgtttcttttttagatttatatgcacgatgaggtggtactatattaca 127  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28003512 tccaactgattgcataacatgaaaatgtaaattacttgcaacatatttttaacgtttcttttttagatttatatgcacgatgaggtggtactatattaca 28003413  T
Q  128 ttattttcttgagaaggtttgacggtagcatcaatttctccacgtagacgtttttgctccatttcttgttcattcatcaac---tcctgtagtaagaaca 224  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  28003412 ttattttcttgagaaggtttgacggtagcatcagtttctccaagtagacgtttttgctccatttcttgttcattcatcaactcctcctgtagtaagaaca 28003313  T
Q  225 tatgaattatttcattactagactaatattgaatatgtata 265  Q
    ||| ||||| ||| |||||||||||||||||||||||||||    
T  28003312 tattaattagttcgttactagactaatattgaatatgtata 28003272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 28 - 278
Target Start/End: Complemental strand, 27979794 - 27979544
Alignment:
Q  28 tccaactgattgcataacatgaaaatgtaaattagttgcaacatatttttaacgtttcttttttagatttatatgcacgatgaggtggtactatattaca 127  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| |||||||||||||||||||||    
T  27979794 tccaactgattgcataacaagaaaatgtaaattagttgcaacatatttttaatgtttcttttttagctttatattcacaatgaggtggtactatattaca 27979695  T
Q  128 ttattttcttgagaaggtttgacggtagcatcaatttctccacgtagacgtttttgctccatttcttgttcattcatcaactcctgtagtaagaacatat 227  Q
    ||||||||| ||||||||||||||||||||||| |||||||| || |||||| ||||||||||| |||||||| |||||||||||||| |||||||||||    
T  27979694 ttattttctggagaaggtttgacggtagcatcagtttctccaagtggacgttgttgctccatttgttgttcatccatcaactcctgtaataagaacatat 27979595  T
Q  228 gaattatttcattactagactaatattgaatatgtatatatttggagagga 278  Q
    |||||| |   ||||||||||||||  ||||||||||||||||||||||||    
T  27979594 gaattagtcttttactagactaataacgaatatgtatatatttggagagga 27979544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 28 - 179
Target Start/End: Complemental strand, 27919666 - 27919515
Alignment:
Q  28 tccaactgattgcataacatgaaaatgtaaattagttgcaacatatttttaacgtttcttttttagatttatatgcacgatgaggtggtactatattaca 127  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| |||||||||||||||||||||    
T  27919666 tccaactgattgcataacaagaaaatgtaaattagttgcaacatatttttaatgtttcttttttagctttatattcacaatgaggtggtactatattaca 27919567  T
Q  128 ttattttcttgagaaggtttgacggtagcatcaatttctccacgtagacgtt 179  Q
    |||||||||||||||||||||||||||| ||||||||||||| || ||||||    
T  27919566 ttattttcttgagaaggtttgacggtagtatcaatttctccaagtggacgtt 27919515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 28 - 169
Target Start/End: Complemental strand, 28036755 - 28036614
Alignment:
Q  28 tccaactgattgcataacatgaaaatgtaaattagttgcaacatatttttaacgtttcttttttagatttatatgcacgatgaggtggtactatattaca 127  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| ||||||||||| ||||||||||||||||||||     
T  28036755 tccaactgattgcataacatgaaaatgtaaattagttgcatcatatttttaatgtttcatttttagctttatatgcacaatgaggtggtactatattacg 28036656  T
Q  128 ttattttcttgagaaggtttgacggtagcatcaatttctcca 169  Q
    ||||||||| |||||| |||||||||||||||| ||||||||    
T  28036655 ttattttctggagaagctttgacggtagcatcagtttctcca 28036614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 11420295 - 11420146
Alignment:
Q  84 tcttttttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcaatttctccacgtagacgtttttg 183  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||  ||||||| ||  |||||||||||||||||||| |||| ||| || |||||| |||    
T  11420295 tcttttttagttttatatgcacaatgagatggtactatattactgtattttcctgcaaaggtttgacggtagcatcagtttcaccaagtggacgttgttg 11420196  T
Q  184 ctccatttcttgttcattcatcaactcctgtagtaagaacatatgaatta 233  Q
    |||||||  ||||||||||||||||||||||| || ||||||||||||||    
T  11420195 ctccattggttgttcattcatcaactcctgtaatatgaacatatgaatta 11420146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 82 - 224
Target Start/End: Complemental strand, 28185050 - 28184908
Alignment:
Q  82 tttcttttttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcaatttctccacgtagacgtttt 181  Q
    |||| ||||||| ||||||||||| | | |||||||| | ||||||| |||| | ||||||||||||||||||| ||||  ||||||| |||||||||      
T  28185050 tttcatttttagctttatatgcacaacgcggtggtacgacattacatgatttacctgagaaggtttgacggtagtatcaggttctccaagtagacgttgc 28184951  T
Q  182 tgctccatttcttgttcattcatcaactcctgtagtaagaaca 224  Q
    |||||||||  |||||||||||||||||||||||  |||||||    
T  28184950 tgctccattgattgttcattcatcaactcctgtaacaagaaca 28184908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 226
Target Start/End: Complemental strand, 28149176 - 28149039
Alignment:
Q  89 tttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcaatttctccacgtagacgtttttgctcca 188  Q
    ||||| ||||||||||| ||| |||||||| ||||||||| |||| | |||||||||||||||| || |||| |||||||| ||  ||||| ||| ||||    
T  28149176 tttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggcagtatcagtttctccaagtgaacgttgttggtcca 28149077  T
Q  189 tttcttgttcattcatcaactcctgtagtaagaacata 226  Q
    ||  | |||||||||||||||||||||  |||||||||    
T  28149076 ttgatcgttcattcatcaactcctgtaacaagaacata 28149039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 81 - 169
Target Start/End: Original strand, 17745306 - 17745394
Alignment:
Q  81 gtttcttttttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcaatttctcca 169  Q
    ||||| |||||||  ||||||  || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  17745306 gtttcatttttagtcttatataaacaatgaggtggtactatattacattattttcctgagaaggtttgacggtagcatcagtttctcca 17745394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 81 - 169
Target Start/End: Original strand, 19046626 - 19046714
Alignment:
Q  81 gtttcttttttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcaatttctcca 169  Q
    ||||| |||||||  ||||||  || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  19046626 gtttcatttttagtcttatataaacaatgaggtggtactatattacattattttcctgagaaggtttgacggtagcatcagtttctcca 19046714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 215
Target Start/End: Original strand, 28509770 - 28509890
Alignment:
Q  95 tttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcaatttctccacgtagacgtttttgctccatttctt 194  Q
    ||||||||||| ||| |||||||| ||||||| | |||| | |||||||||||||||| || |||   ||||||| ||||||||| |||||||||   ||    
T  28509770 tttatatgcacaatgcggtggtacgatattacttgatttacctgagaaggtttgacggcagaatcggcttctccaagtagacgttgttgctccatcgatt 28509869  T
Q  195 gttcattcatcaactcctgta 215  Q
    |||||||||||||||||||||    
T  28509870 gttcattcatcaactcctgta 28509890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 26114053 - 26114127
Alignment:
Q  95 tttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcaatttctcca 169  Q
    ||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||    
T  26114053 tttatatgcacaatgagatggtactatattacattatcttcttgagaaggtttgatggtagtatcagtttctcca 26114127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 28480591 - 28480707
Alignment:
Q  99 tatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcaatttctccacgtagacgtttttgctccatttcttgttc 198  Q
    ||||||| ||| |||||||| ||||||||| |||| | |||||||||||||||| || |||   ||||||| ||||||||| |||||||||   |||||     
T  28480591 tatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacgggagtatcggcttctccaagtagacgttgttgctccatagattgttg 28480690  T
Q  199 attcatcaactcctgta 215  Q
    |||||||||||||||||    
T  28480691 attcatcaactcctgta 28480707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 214
Target Start/End: Complemental strand, 28082988 - 28082856
Alignment:
Q  82 tttcttttttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcaatttctccacgtagacgtttt 181  Q
    |||| ||||||| ||||||||||| |||   |||||  ||||| ||| |||| | ||| |||||||||||| || |||| ||||||||  |||||||| |    
T  28082988 tttcatttttagctttatatgcacaatgtattggtatgatattgcatgatttacctgaaaaggtttgacggcagtatcagtttctccaactagacgttgt 28082889  T
Q  182 tgctccatttcttgttcattcatcaactcctgt 214  Q
    || ||||||  ||||||||||||||||||||||    
T  28082888 tggtccattgtttgttcattcatcaactcctgt 28082856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 27459625 - 27459676
Alignment:
Q  28 tccaactgattgcataacatgaaaatgtaaattagttgcaacatatttttaa 79  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  27459625 tccaactgcttgcataacatgaaaatgtaaattagttgcaacttatttttaa 27459676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 26128809 - 26128879
Alignment:
Q  95 tttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcaatttc 165  Q
    ||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||||| ||||| |||| ||||    
T  26128809 tttatttgcacgatgagatggtactatattacattatcttcctgagaaggtttgatggtagtatcagtttc 26128879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 137 - 226
Target Start/End: Complemental strand, 28134831 - 28134742
Alignment:
Q  137 tgagaaggtttgacggtagcatcaatttctccacgtagacgtttttgctccatttcttgttcattcatcaactcctgtagtaagaacata 226  Q
    |||||||||||||||| || |||| |||||||| ||  ||||| ||| ||||||  |||||||||||||||||||||||  |||||||||    
T  28134831 tgagaaggtttgacggaagtatcagtttctccaagtgaacgttgttggtccattgattgttcattcatcaactcctgtaacaagaacata 28134742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 27459738 - 27459794
Alignment:
Q  110 aggtggtactatattacattattttcttgagaaggtttgacggtagcatcaatttct 166  Q
    |||||||| ||||||||||||||||| ||||||||||||||| |||||||| |||||    
T  27459738 aggtggtattatattacattattttcctgagaaggtttgacgctagcatcagtttct 27459794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 169
Target Start/End: Complemental strand, 28054659 - 28054572
Alignment:
Q  82 tttcttttttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcaatttctcca 169  Q
    |||| ||||||  |||||||||||||||  ||||||| ||| ||||| |||| | |||||||||||||||| || |||||||||||||    
T  28054659 tttcatttttatctttatatgcacgatgcagtggtacaataatacatgatttacctgagaaggtttgacggcagtatcaatttctcca 28054572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 169
Target Start/End: Complemental strand, 28065084 - 28064997
Alignment:
Q  82 tttcttttttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcaatttctcca 169  Q
    |||| ||||||  |||||||||||||||  ||||||| ||| ||||| |||| | |||||||||||||||| || |||||||||||||    
T  28065084 tttcatttttatctttatatgcacgatgcagtggtacaataatacatgatttacctgagaaggtttgacggcagtatcaatttctcca 28064997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 18025265 - 18025315
Alignment:
Q  29 ccaactgattgcataacatgaaaatgtaaattagttgcaacatatttttaa 79  Q
    ||||||||||||||| ||||||||||||||||||||||| |||| ||||||    
T  18025265 ccaactgattgcatagcatgaaaatgtaaattagttgcagcatagttttaa 18025315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 8539835 - 8539883
Alignment:
Q  28 tccaactgattgcataacatgaaaatgtaaattagttgcaacatatttt 76  Q
    ||||||||||||||||| |||||||||||||||||||||  ||||||||    
T  8539835 tccaactgattgcataaaatgaaaatgtaaattagttgcgtcatatttt 8539883  T

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Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 27390833 - 27390884
Alignment:
Q  28 tccaactgattgcataacatgaaaatgtaaattagttgcaacatatttttaa 79  Q
    ||||||| |||||||||||||||||| ||||||||||||| |||||| ||||    
T  27390833 tccaactaattgcataacatgaaaatttaaattagttgcagcatattattaa 27390884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 11420365 - 11420332
Alignment:
Q  46 atgaaaatgtaaattagttgcaacatatttttaa 79  Q
    ||||||||||||||||||||||||||||||||||    
T  11420365 atgaaaatgtaaattagttgcaacatatttttaa 11420332  T

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Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 28005161 - 28005112
Alignment:
Q  28 tccaactgattgcataacatgaaaatgtaaattagttgcaacatattttt 77  Q
    ||||||| |||||||| ||||||||||||||||||||||| || ||||||    
T  28005161 tccaactaattgcatagcatgaaaatgtaaattagttgcagcagattttt 28005112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 26202529 - 26202577
Alignment:
Q  121 tattacattattttcttgagaaggtttgacggtagcatcaatttctcca 169  Q
    ||||||||||| ||||||||||||||||| ||||| |||| ||||||||    
T  26202529 tattacattatattcttgagaaggtttgatggtagtatcagtttctcca 26202577  T

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Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 18077341 - 18077380
Alignment:
Q  37 ttgcataacatgaaaatgtaaattagttgcaacatatttt 76  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  18077341 ttgcataaaatgaaaacgtaaattagttgcaacatatttt 18077380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 19476187 - 19476136
Alignment:
Q  28 tccaactgattgcataacatgaaaatgtaaattagttgcaacatatttttaa 79  Q
    ||||||| ||| |||| || |||||||||||||||||| |||||||||||||    
T  19476187 tccaactaattccatagcaagaaaatgtaaattagttgtaacatatttttaa 19476136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 26179558 - 26179609
Alignment:
Q  28 tccaactgattgcataacatgaaaatgtaaattagttgcaacatatttttaa 79  Q
    ||||||| |||||||  ||||||||||||| ||||||||| |||||||||||    
T  26179558 tccaactaattgcattgcatgaaaatgtaagttagttgcagcatatttttaa 26179609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 26235989 - 26236036
Alignment:
Q  28 tccaactgattgcataacatgaaaatgtaaattagttgcaacatattt 75  Q
    ||||||| |||||||  ||||||||||||||||||||||| |||||||    
T  26235989 tccaactaattgcattgcatgaaaatgtaaattagttgcagcatattt 26236036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 27377591 - 27377540
Alignment:
Q  28 tccaactgattgcataacatgaaaatgtaaattagttgcaacatatttttaa 79  Q
    ||||||| |||||||| ||||||||| |||||||||||||  ||||||||||    
T  27377591 tccaactaattgcatagcatgaaaatataaattagttgcagaatatttttaa 27377540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 26111203 - 26111237
Alignment:
Q  45 catgaaaatgtaaattagttgcaacatatttttaa 79  Q
    ||||||||||||||||||||||||||| |||||||    
T  26111203 catgaaaatgtaaattagttgcaacatgtttttaa 26111237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 26205486 - 26205520
Alignment:
Q  45 catgaaaatgtaaattagttgcaacatatttttaa 79  Q
    ||||||||||||||||||||||||||| |||||||    
T  26205486 catgaaaatgtaaattagttgcaacatgtttttaa 26205520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 26233549 - 26233583
Alignment:
Q  45 catgaaaatgtaaattagttgcaacatatttttaa 79  Q
    ||||||||||||||||||||||||||| |||||||    
T  26233549 catgaaaatgtaaattagttgcaacatgtttttaa 26233583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 26128207 - 26128252
Alignment:
Q  31 aactgattgcataacatgaaaatgtaaattagttgcaacatatttt 76  Q
    |||| |||||||| |||||||||||||||||||||||  |||||||    
T  26128207 aactaattgcatagcatgaaaatgtaaattagttgcattatatttt 26128252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 26129518 - 26129559
Alignment:
Q  38 tgcataacatgaaaatgtaaattagttgcaacatatttttaa 79  Q
    |||||| ||||||||||||| ||||||||| |||||||||||    
T  26129518 tgcatagcatgaaaatgtaatttagttgcagcatatttttaa 26129559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 26178257 - 26178302
Alignment:
Q  31 aactgattgcataacatgaaaatgtaaattagttgcaacatatttt 76  Q
    |||| |||||||| |||||||||||||||||||||||  |||||||    
T  26178257 aactaattgcatagcatgaaaatgtaaattagttgcattatatttt 26178302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 26111550 - 26111606
Alignment:
Q  98 atatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggta 154  Q
    |||||||  ||||| ||||||||||||||||| | ||| ||||||||||||| ||||    
T  26111550 atatgcataatgagatggtactatattacattttcttcctgagaaggtttgatggta 26111606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 26202091 - 26202139
Alignment:
Q  28 tccaactgattgcataacatgaaaatgtaaattagttgcaacatatttt 76  Q
    |||| |||| |||||| |||||||||||||||||||||||  |||||||    
T  26202091 tccagctgaatgcatagcatgaaaatgtaaattagttgcattatatttt 26202139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 26205834 - 26205890
Alignment:
Q  98 atatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggta 154  Q
    |||||||  ||||| ||||||||||||||||| | ||| ||||||||||||| ||||    
T  26205834 atatgcataatgagatggtactatattacattttcttcctgagaaggtttgatggta 26205890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 26233879 - 26233935
Alignment:
Q  98 atatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggta 154  Q
    |||||||  ||||| ||||||||||||||||| | ||| ||||||||||||| ||||    
T  26233879 atatgcataatgagatggtactatattacattttcttcctgagaaggtttgatggta 26233935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 27459806 - 27459846
Alignment:
Q  193 ttgttcattcatcaactcctgtagtaagaacatatgaatta 233  Q
    |||||||||||| |||||||||| |||||||||| ||||||    
T  27459806 ttgttcattcattaactcctgtaataagaacatacgaatta 27459846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 27919512 - 27919476
Alignment:
Q  197 tcattcatcaactcctgtagtaagaacatatgaatta 233  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  27919512 tcatttatcaactcctgtaataagaacatatgaatta 27919476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 28160436 - 28160356
Alignment:
Q  144 gtttgacggtagcatcaatttctccacgtagacgtttttgctccatttcttgttcattcatcaactcctgtagtaagaaca 224  Q
    |||||| ||||| ||||  ||||||| |||||||||  || |||||   |||||||||||||||||||||||  |||||||    
T  28160436 gtttgatggtagtatcaggttctccaagtagacgttgctgttccatcgattgttcattcatcaactcctgtaacaagaaca 28160356  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 82 - 224
Target Start/End: Original strand, 8692895 - 8693037
Alignment:
Q  82 tttcttttttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcaatttctccacgtagacgtttt 181  Q
    |||||||||||| ||||||||||| |||  ||||||| ||||||||| |||| | |||||||||||| ||| |  |||| |||||||| || |||||| |    
T  8692895 tttcttttttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttgccggcaatatcagtttctccaagtggacgttgt 8692994  T
Q  182 tgctccatttcttgttcattcatcaactcctgtagtaagaaca 224  Q
    |  |||||   ||||||||||||||| |||||||  |||||||    
T  8692995 ttgtccatcgattgttcattcatcaattcctgtaacaagaaca 8693037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 89 - 226
Target Start/End: Complemental strand, 18596 - 18459
Alignment:
Q  89 tttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcaatttctccacgtagacgtttttgctcca 188  Q
    ||||| ||||||||||| ||| ||| |||  ||||||||| |||| | |||||||||||||||| |  |||| |||||||| || |||||| ||||| ||    
T  18596 tttagctttatatgcacaatgcggttgtaggatattacatgatttacctgagaaggtttgacggcaatatcagtttctccaagtggacgttgttgctgca 18497  T
Q  189 tttcttgttcattcatcaactcctgtagtaagaacata 226  Q
    |   || ||||||||||||||||||||  |||||||||    
T  18496 tcgatttttcattcatcaactcctgtaacaagaacata 18459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 1383 - 1332
Alignment:
Q  28 tccaactgattgcataacatgaaaatgtaaattagttgcaacatatttttaa 79  Q
    ||||||| |||||||| ||| ||||||||||||||||||| |||||||||||    
T  1383 tccaactaattgcataccataaaaatgtaaattagttgcagcatatttttaa 1332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 1286 - 1208
Alignment:
Q  95 tttatatgcacgatgaggtggtact----atattacattattttcttgagaaggtttgacggtagcatcaatttctcca 169  Q
    ||||||||||| ||||||| |||||    ||||||||||| ||||  || ||||||||| ||||||||||| |||||||    
T  1286 tttatatgcacaatgaggtagtactggctatattacattagtttccagacaaggtttgatggtagcatcaagttctcca 1208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 53891 - 53942
Alignment:
Q  28 tccaactgattgcataacatgaaaatgtaaattagttgcaacatatttttaa 79  Q
    |||||||||| ||||| |||||||||||||||||||||||  ||||||||||    
T  53891 tccaactgatagcatagcatgaaaatgtaaattagttgcacaatatttttaa 53942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 22392520 - 22392469
Alignment:
Q  28 tccaactgattgcataacatgaaaatgtaaattagttgcaacatatttttaa 79  Q
    ||||||||||||| || |||||||||||||||||||||||  ||||||||||    
T  22392520 tccaactgattgcgtagcatgaaaatgtaaattagttgcagaatatttttaa 22392469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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