View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8031_low_11 (Length: 251)
Name: NF8031_low_11
Description: NF8031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8031_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 131 - 233
Target Start/End: Complemental strand, 41251471 - 41251369
Alignment:
| Q |
131 |
tcacattattcttacgtgagaaaccatgaggcccatatggaatggaacagaaaagtattttaatattattaatatgtccatatacatgtgatctatccta |
230 |
Q |
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| T |
41251471 |
tcacattattcttacgtgagaaaccatgaggcccatatggaatggaacagaaaagtattttaatattattaatatgtccatatacatgtgatctatccta |
41251372 |
T |
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| Q |
231 |
tct |
233 |
Q |
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||| |
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| T |
41251371 |
tct |
41251369 |
T |
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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 41251589 - 41251543
Alignment:
| Q |
9 |
attacaactcacaaaagcgtgggcggtcatatatgactcaataataa |
55 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41251589 |
attacaactcacaaaagcgtgggcggtcatatatgacccaataataa |
41251543 |
T |
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