View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8031_low_12 (Length: 247)

Name: NF8031_low_12
Description: NF8031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8031_low_12
NF8031_low_12
[»] chr7 (7 HSPs)
chr7 (1-247)||(477995-478241)
chr7 (155-219)||(28195164-28195228)
chr7 (86-172)||(21979060-21979146)
chr7 (210-247)||(478242-478279)
chr7 (210-247)||(478280-478317)
chr7 (86-216)||(33164410-33164546)
chr7 (104-182)||(34673618-34673696)
[»] chr8 (1 HSPs)
chr8 (2-202)||(37436557-37436763)
[»] chr5 (2 HSPs)
chr5 (89-218)||(408067-408196)
chr5 (116-202)||(41485205-41485291)
[»] chr2 (5 HSPs)
chr2 (77-176)||(45224838-45224940)
chr2 (72-202)||(13693837-13693967)
chr2 (141-219)||(41454375-41454453)
chr2 (88-144)||(22650312-22650368)
chr2 (99-218)||(19296106-19296225)
[»] scaffold0025 (1 HSPs)
scaffold0025 (72-202)||(36746-36880)
[»] chr3 (2 HSPs)
chr3 (72-136)||(28144874-28144938)
chr3 (72-154)||(28080376-28080454)
[»] chr1 (3 HSPs)
chr1 (74-166)||(35812255-35812347)
chr1 (77-138)||(20990423-20990484)
chr1 (170-218)||(12429125-12429173)
[»] chr4 (2 HSPs)
chr4 (79-202)||(16422494-16422617)
chr4 (95-177)||(44203784-44203866)
[»] chr6 (1 HSPs)
chr6 (72-166)||(22717522-22717616)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 477995 - 478241
Alignment:
Q  1 gcatcacgataagagtttaaaaatttgaaaattagtgttggttacaacaacnnnnnnnctcatatgcatgcataacactatattatcatattaatataca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |       |||||||||| |||||||||||||||||||||||||||||||    
T  477995 gcatcacgataagagtttaaaaatttgaaaattagtgttggttacaacagcaaaaaaactcatatgcacgcataacactatattatcatattaatataca 478094  T
Q  101 agagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgtacccggtacgggtacttcacctttttaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  478095 agagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgtacccggtacgggtacttcacctttttaca 478194  T
Q  201 agcgctcatgcttcagagctccaaatctatcataatgatgtccaaac 247  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  478195 agcgctcaggcttcagagctccaaatctatcataatgatgtccaaac 478241  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 28195228 - 28195164
Alignment:
Q  155 acgagtaccgtatgtgtacccggtacgggtacttcacctttttacaagcgctcatgcttcagagc 219  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||  | |||||||||||||    
T  28195228 acgagtaccgtatgcgtacccggtacgagtacttcacctttttacaagtacccatgcttcagagc 28195164  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 172
Target Start/End: Original strand, 21979060 - 21979146
Alignment:
Q  86 tcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgta 172  Q
    ||||||||||| | ||||||||| |||| ||| || ||||| ||||||||||||||||| ||  ||||||  |||||||||||||||    
T  21979060 tcatattaatacataagagaaagccacattttccactcacaatagaataatgagcaaaaatggagtaccaaaagtaccgtatgtgta 21979146  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 478242 - 478279
Alignment:
Q  210 gcttcagagctccaaatctatcataatgatgtccaaac 247  Q
    ||||||||||||||||||||||||||||||||||||||    
T  478242 gcttcagagctccaaatctatcataatgatgtccaaac 478279  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 478280 - 478317
Alignment:
Q  210 gcttcagagctccaaatctatcataatgatgtccaaac 247  Q
    ||||||||||||||||||||||||||||||||||||||    
T  478280 gcttcagagctccaaatctatcataatgatgtccaaac 478317  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 216
Target Start/End: Original strand, 33164410 - 33164546
Alignment:
Q  86 tcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgt------gtacccggta 179  Q
    ||||||| || || ||||||||| || || ||||| ||||| || |||| ||||||||| ||  ||||||||||||||||| ||      ||||||||||    
T  33164410 tcatattgatgtataagagaaagccaaaaatttcactcacattacaatattgagcaaaaatggagtaccacgagtaccgtacgtccgtacgtacccggta 33164509  T
Q  180 cgggtacttcacctttttacaagcgctcatgcttcag 216  Q
    |||| ||||||||  ||||||||  ||||||||||||    
T  33164510 cgggcacttcaccactttacaagtactcatgcttcag 33164546  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 34673618 - 34673696
Alignment:
Q  104 gaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgtacccggtacgg 182  Q
    |||||||||| |||||| ||||| |||||||||||| || | ||  ||| ||||||||||||| |||||  ||||||||    
T  34673618 gaaagtcacatttttcactcacaatagaataatgagaaataatggagtagcacgagtaccgtacgtgtattcggtacgg 34673696  T

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Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 202
Target Start/End: Original strand, 37436557 - 37436763
Alignment:
Q  2 catcacgataagagtttaaaaatttgaaaattagtgttggttacaacaacnnnnnnn-----ctcatatgcatgcataacactatattatcatattaata 96  Q
    ||||||||||| |||||| ||| ||||||||||||||||||||||||||             ||||||||||   |||||| |||||| |||||||||||    
T  37436557 catcacgataaaagtttagaaagttgaaaattagtgttggttacaacaataacaacaaaaaactcatatgcacatataacaatatattgtcatattaata 37436656  T
Q  97 tacaagagaaagtcacaattttcattcacagtagaataatgagc-aaaattgatgtaccacgagtaccgtatgtgtacccggtacgggtacttcaccttt 195  Q
    |||| ||||||||| ||||||||| ||| ||||||||||||||| |||| ||| |||||| ||||||  ||| ||| | ||||| |||||||||||||||    
T  37436657 tacatgagaaagtcgcaattttcactcatagtagaataatgagcaaaaaatgaagtaccatgagtacaatatatgttctcggtatgggtacttcaccttt 37436756  T
Q  196 ttacaag 202  Q
    |||||||    
T  37436757 ttacaag 37436763  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 408196 - 408067
Alignment:
Q  89 tattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgtacccggtacgggtactt 188  Q
    ||||||| || ||||||||| ||||| ||||| ||||| || |||||||||||||| ||  ||||||||||||||||| | |||||| |||| |||||||    
T  408196 tattaatgtataagagaaagccacaaatttcactcacaatacaataatgagcaaaaatggagtaccacgagtaccgtacgcgtacccagtaccggtactt 408097  T
Q  189 cacctttttacaagcgctcatgcttcagag 218  Q
    |||| |||||||||  | ||||||||||||    
T  408096 caccgttttacaagtacccatgcttcagag 408067  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 41485205 - 41485291
Alignment:
Q  116 tttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgtacccggtacgggtacttcacctttttacaag 202  Q
    ||||||||| |||| ||||||||| |||||||| || |||| | ||||||| | ||||||||||||||||||||| | |||||||||    
T  41485205 tttcattcagagtacaataatgaggaaaattgaagtgccaccaataccgtacgcgtacccggtacgggtacttcatcattttacaag 41485291  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 176
Target Start/End: Complemental strand, 45224940 - 45224838
Alignment:
Q  77 actatattatcatatta---atatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgtac 173  Q
    |||||||||||||||||   ||||| ||||||||| ||||| ||||| ||||| || |||||||||||||| ||  ||||||||||||||||| ||||||    
T  45224940 actatattatcatattattaatatataagagaaagccacaaatttcactcacaatacaataatgagcaaaaatggagtaccacgagtaccgtacgtgtac 45224841  T
Q  174 ccg 176  Q
    |||    
T  45224840 ccg 45224838  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 202
Target Start/End: Original strand, 13693837 - 13693967
Alignment:
Q  72 ataacactatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgt 171  Q
    |||||| |||||| || ||||||| || | ||||||| || || ||||| ||||| ||  ||||||| ||||| |   ||| || |||||||||||  ||    
T  13693837 ataacattatattgtcctattaatgtataggagaaagccataaatttcactcacaataatataatgaacaaaaatagagtatcaagagtaccgtatccgt 13693936  T
Q  172 acccggtacgggtacttcacctttttacaag 202  Q
    ||||| ||||||||||||||| |||||||||    
T  13693937 acccgatacgggtacttcaccgttttacaag 13693967  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 41454453 - 41454375
Alignment:
Q  141 aaaattgatgtaccacgagtaccgtatgtgtacccggtacgggtacttcacctttttacaagcgctcatgcttcagagc 219  Q
    |||| ||| ||||||||||||||||| | ||||||| ||||||||||||| | |||||||||  | ||||||| |||||    
T  41454453 aaaaatgaagtaccacgagtaccgtacgcgtacccgatacgggtacttcatcgttttacaagtacccatgctttagagc 41454375  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 22650312 - 22650368
Alignment:
Q  88 atattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaa 144  Q
    ||||||||||| || ||||| |||||||||||| ||| | |||||||||||||||||    
T  22650312 atattaatatataaaagaaaatcacaattttcactcataatagaataatgagcaaaa 22650368  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 218
Target Start/End: Original strand, 19296106 - 19296225
Alignment:
Q  99 caagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgtacccggtacgggtacttcaccttttta 198  Q
    |||||||||| |||| ||| || ||||| ||| | ||||||||||| | | |||||| |||||  |||| |||| |  ||||||||||||| || |||||    
T  19296106 caagagaaagccacattttccactcacaatagcacaatgagcaaaaataaagtaccatgagtattgtatatgtatcttgtacgggtacttcgccatttta 19296205  T
Q  199 caagcgctcatgcttcagag 218  Q
    | ||  ||||||||||||||    
T  19296206 cgagtactcatgcttcagag 19296225  T

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Target: scaffold0025 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 202
Target Start/End: Complemental strand, 36880 - 36746
Alignment:
Q  72 ataacactatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgta----t 167  Q
    |||||| ||||||||||||||||| || | ||||||| ||||| || || ||||| || |||| ||||||||| ||  |||||||||||||| ||    |    
T  36880 ataacattatattatcatattaatgtataggagaaagccacaaattccactcacaatacaatattgagcaaaactggagtaccacgagtaccatacgggt 36781  T
Q  168 gtgtacccggtacgggtacttcacctttttacaag 202  Q
    | ||||||||||| ||||||||||| |||||||||    
T  36780 gagtacccggtacaggtacttcaccgttttacaag 36746  T

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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 28144938 - 28144874
Alignment:
Q  72 ataacactatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataat 136  Q
    |||| |||||||||||||||||||| | ||||||||||||||||||||| ||||| |||||||||    
T  28144938 ataatactatattatcatattaataaataagagaaagtcacaattttcaatcacaatagaataat 28144874  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 154
Target Start/End: Complemental strand, 28080454 - 28080376
Alignment:
Q  72 ataacactatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtacc 154  Q
    |||| |||||||||||||||    ||| ||||||||||||||||||||| ||||| ||||||||||| ||||| ||| |||||    
T  28080454 ataaaactatattatcatat----atataagagaaagtcacaattttcactcacaatagaataatgaacaaaaatgaagtacc 28080376  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 166
Target Start/End: Original strand, 35812255 - 35812347
Alignment:
Q  74 aacactatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgta 166  Q
    ||||||||||| |||||||||| || |||||| || ||||||||| | ||||| ||||||||||||||||| ||  ||| |||||||||||||    
T  35812255 aacactatattgtcatattaatctataagagagagccacaatttttactcacaatagaataatgagcaaaaatggagtatcacgagtaccgta 35812347  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 20990423 - 20990484
Alignment:
Q  77 actatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataatga 138  Q
    |||||||||||||||||||||| || |||||| |||||||||||  |||| ||||| |||||    
T  20990423 actatattatcatattaatatataaaagaaagccacaattttcacccacaatagaaaaatga 20990484  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 12429173 - 12429125
Alignment:
Q  170 gtacccggtacgggtacttcacctttttacaagcgctcatgcttcagag 218  Q
    |||||||||||||||||||||| ||||||| ||  ||||||||||||||    
T  12429173 gtacccggtacgggtacttcacatttttacgagtactcatgcttcagag 12429125  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 202
Target Start/End: Original strand, 16422494 - 16422617
Alignment:
Q  79 tatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgtacccggt 178  Q
    |||||| |||||||| | || ||||||| |||| || ||||| ||||| || ||||||||| |||| ||| ||||||||||||| ||| | ||| ||| |    
T  16422494 tatattgtcatattagtgtataagagaatgtcataaatttcactcacaatacaataatgagaaaaaatgaagtaccacgagtactgtacgcgtatccgat 16422593  T
Q  179 acgggtacttcacctttttacaag 202  Q
    |||||||||||| | |||||||||    
T  16422594 acgggtacttcatcgttttacaag 16422617  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 44203784 - 44203866
Alignment:
Q  95 tatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgtatgtgtacccgg 177  Q
    |||||||||| ||| ||||| ||||| |||||||| |||||||||||||| ||  ||| ||||||||||||| | ||||||||    
T  44203784 tatacaagagtaagccacaaatttcactcacagtacaataatgagcaaaaatggagtagcacgagtaccgtacgcgtacccgg 44203866  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 22717522 - 22717616
Alignment:
Q  72 ataacactatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagcaaaattgatgtaccacgagtaccgta 166  Q
    |||| ||||| | |||| || |||||| |||||||| ||||||||||||| |||| ||||||| |||| |||| |   ||| |||||||||||||    
T  22717522 ataatactatgtcatcaaatcaatatataagagaaaatcacaattttcatccacaatagaatactgaggaaaaatagggtatcacgagtaccgta 22717616  T

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