View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8031_low_14 (Length: 227)

Name: NF8031_low_14
Description: NF8031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8031_low_14
NF8031_low_14
[»] chr1 (2 HSPs)
chr1 (11-190)||(31197929-31198107)
chr1 (172-227)||(31197912-31197967)
[»] chr6 (4 HSPs)
chr6 (10-192)||(26464191-26464382)
chr6 (27-91)||(13379112-13379176)
chr6 (172-227)||(26464176-26464231)
chr6 (93-123)||(680749-680779)
[»] scaffold0182 (1 HSPs)
scaffold0182 (27-91)||(32489-32553)
[»] chr7 (1 HSPs)
chr7 (27-91)||(21723853-21723917)
[»] chr5 (1 HSPs)
chr5 (27-74)||(26616532-26616582)
[»] chr8 (3 HSPs)
chr8 (93-123)||(20385946-20385976)
chr8 (93-123)||(30711233-30711263)
chr8 (93-123)||(30719010-30719040)
[»] chr2 (1 HSPs)
chr2 (93-123)||(44044468-44044498)


Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 31198107 - 31197929
Alignment:
Q  11 acacacgaacaacaacggaaggaggttctttctctgctgcatatcgtccacttcaacaaccattttcatcttcaattttctagatttttgttcctgcatt 110  Q
    |||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31198107 acacacgaacaacaattgaaggaggttcttcctctgctgcatatcgtccacttcaacaaccattttcatcttcaattttctagatttttgttcctgcatt 31198008  T
Q  111 cataaacaaaccacctgattnnnnnnnnnctccacaatcaccattcatcttctcaaatccgcattcattttctcaaatcc 190  Q
    ||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31198007 cataaacaaaccacctgatt-aaaaaaaactccacaatcaccattcatcttctcaaatccgcattcatcttctcaaatcc 31197929  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 31197967 - 31197912
Alignment:
Q  172 cattcattttctcaaatccacattcatattctcaaatccactttttcgtcttctcc 227  Q
    ||||||| ||||||||||| ||||||| ||||||||||| |||||| |||||||||    
T  31197967 cattcatcttctcaaatccgcattcatcttctcaaatccgcttttttgtcttctcc 31197912  T

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Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 26464382 - 26464191
Alignment:
Q  10 cacacacgaacaacaacggaaggaggttctttctctgctgcatatcgtccacttcaacaaccattttcatcttcaattttctagatttttgttcctgcat 109  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26464382 cacacacgaacaacaatggaaggaggttctttctctgctgcatatcgtccacttcaacaaccattttcatcttcaattttctagatttttgttcctgcat 26464283  T
Q  110 tcataaacaaaccacctgatt---------nnnnnnnnnctccacaatcaccattcatcttctcaaatccgcattcattttctcaaatccac 192  Q
    |||||||||||||||||||||                  | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26464282 tcataaacaaaccacctgatttaaaaaaaaaaaaaaaaaccccacaatcaccattcatcttctcaaatccgcattcattttctcaaatccac 26464191  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 13379112 - 13379176
Alignment:
Q  27 ggaaggaggttctttctctgctgcatatcgtccacttcaacaaccattttcatcttcaattttct 91  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  13379112 ggaaggaggttctttctctactgcatatcgtcaacttcaacaaccattttcatcttcaattttct 13379176  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 26464231 - 26464176
Alignment:
Q  172 cattcattttctcaaatccacattcatattctcaaatccactttttcgtcttctcc 227  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  26464231 cattcatcttctcaaatccgcattcattttctcaaatccactttttcgtcttctcc 26464176  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 123
Target Start/End: Complemental strand, 680779 - 680749
Alignment:
Q  93 gatttttgttcctgcattcataaacaaacca 123  Q
    |||||||||||||||||||||||||||||||    
T  680779 gatttttgttcctgcattcataaacaaacca 680749  T

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Target: scaffold0182 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 32553 - 32489
Alignment:
Q  27 ggaaggaggttctttctctgctgcatatcgtccacttcaacaaccattttcatcttcaattttct 91  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32553 ggaaggaggttctttctctgctgcatatcgtcaacttcaacaaccattttcatcttcaattttct 32489  T

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Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 21723917 - 21723853
Alignment:
Q  27 ggaaggaggttctttctctgctgcatatcgtccacttcaacaaccattttcatcttcaattttct 91  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21723917 ggaaggaggttctttctctgctgcatatcgtcaacttcaacaaccattttcatcttcaattttct 21723853  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 26616532 - 26616582
Alignment:
Q  27 ggaaggaggttctttctctgctgca---tatcgtccacttcaacaaccatt 74  Q
    |||||||| ||||||||||||||||   |||||||||||||||||||||||    
T  26616532 ggaaggagcttctttctctgctgcagcatatcgtccacttcaacaaccatt 26616582  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 123
Target Start/End: Original strand, 20385946 - 20385976
Alignment:
Q  93 gatttttgttcctgcattcataaacaaacca 123  Q
    |||||||||||||||||||||||||||||||    
T  20385946 gatttttgttcctgcattcataaacaaacca 20385976  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 123
Target Start/End: Original strand, 30711233 - 30711263
Alignment:
Q  93 gatttttgttcctgcattcataaacaaacca 123  Q
    |||||||||||||||||||||||||||||||    
T  30711233 gatttttgttcctgcattcataaacaaacca 30711263  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 123
Target Start/End: Original strand, 30719010 - 30719040
Alignment:
Q  93 gatttttgttcctgcattcataaacaaacca 123  Q
    |||||||||||||||||||||||||||||||    
T  30719010 gatttttgttcctgcattcataaacaaacca 30719040  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 123
Target Start/End: Original strand, 44044468 - 44044498
Alignment:
Q  93 gatttttgttcctgcattcataaacaaacca 123  Q
    |||||||||||||||||||||||||||||||    
T  44044468 gatttttgttcctgcattcataaacaaacca 44044498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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