View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8031_low_2 (Length: 803)
Name: NF8031_low_2
Description: NF8031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8031_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 698; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 698; E-Value: 0
Query Start/End: Original strand, 16 - 785
Target Start/End: Complemental strand, 28677271 - 28676502
Alignment:
| Q |
16 |
aatatctctgttatctactaccagtattcttgaatagtttctgagaattttgatatttatgactcttgtgttatcttctaccagtattctaccagatagc |
115 |
Q |
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| T |
28677271 |
aatatctctgtaatctactaccagtattcttcaatagtttctgagaattttgatatttatgactcttgtgttatcttctaccagtat-ctactagatagc |
28677173 |
T |
|
| Q |
116 |
attcttaaaattatttgtgctactcccctattgttgttaaaatgaaatattcagannnnnnn-aaattattgtttcagcttgatcaaagaggaatcttgc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28677172 |
attcttaaaattatttgtgctactcccctattgttgttaaaatgaaatattcagattttttttaaattattgtttcagcttgatcaaagaggaatcttgc |
28677073 |
T |
|
| Q |
215 |
aaggagcaagaagttcacatgctattgccgtagtaggacagaaggtctatgcattcggcggtgagtttgagccacgtgtccccgttgataacaagttaca |
314 |
Q |
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| T |
28677072 |
aaggagcaagaagttcacatgctattgccgtagtaggacagaaggtctatgcattcggcggtgagtttgagccacgtgtccccgttgataacaagttaca |
28676973 |
T |
|
| Q |
315 |
cgtgtacgacctagataccttgacatggtcagtagctgatgtatccgggaacacaccgccaccacgtgtaggcgtcacgatggctgcagttggagaaacc |
414 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28676972 |
cgtgtacgacctagataccttggcatggtcagtagccgatgtatccgggaacacaccgccaccacgtgtaggtgtcacgatggctgcagttggagaaacc |
28676873 |
T |
|
| Q |
415 |
atctatgtatttggtggaagagatgctgaacacaatgaactcaatgagctctattcttttgacactaaaaccaacaattgggccttgatttcaagtggag |
514 |
Q |
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| T |
28676872 |
atctatgtatttggtggaagagatgctgaacacaatgaactcaatgagctctattcttttgacactaaaaccaacaattgggccttgatttcaagtggag |
28676773 |
T |
|
| Q |
515 |
atattgggcctcctaaccggagctatcactccatgactgccgatgaccgaaatgtgtatgttttcggcggctgtggggttgccggaaggctgaatgattt |
614 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28676772 |
atattgggcctcctaaccgtagctatcactccatgactgccgatgaccgaaatgtgtatgttttcggcggctgtggggttgccggaaggctgaatgattt |
28676673 |
T |
|
| Q |
615 |
atgggcatttgatgttgtggatggcaagtgggtggaatttccatctcccggtgaaagttgcaagggaagaggtgggccgggcctaacagtggcccaagga |
714 |
Q |
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| T |
28676672 |
atgggcatttgatgttgtggatggcaagtgggcggaattaccatctcccggtgaaagttgcaagggaagaggtgggccgggcctaacagtggcccaagga |
28676573 |
T |
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| Q |
715 |
aaaatatgggttgtgtatggttttgctggaatggaagtggatgacgtgcatttcttcaacctggcccaaaa |
785 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28676572 |
aaaatatgggttgtgtatggttttgctggaatggaagtggatgacgtgcatttcttcaacctggcccaaaa |
28676502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 248 - 455
Target Start/End: Complemental strand, 28668399 - 28668192
Alignment:
| Q |
248 |
taggacagaaggtctatgcattcggcggtgagtttgagccacgtgtccccgttgataacaagttacacgtgtacgacctagataccttgacatggtcagt |
347 |
Q |
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||||||| |||||||||||||| | |||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
28668399 |
taggacaacaggtctatgcattcaggggtgagttagagccacgtgtcctcgttgataacaagttacacgtgtacgaattagataccttgacatggtcgat |
28668300 |
T |
|
| Q |
348 |
agctgatgtatccgggaacacaccgccaccacgtgtaggcgtcacgatggctgcagttggagaaaccatctatgta-tttggtggaagagatgctgaaca |
446 |
Q |
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|| |||||||||| ||||| || || |||| ||| || ||||| || |||||| ||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
28668299 |
agtcgatgtatccgacaacac-ccaccgccacatgtcggtgtcacaatagctgcacttggagaaaccatctatatattttggtggaagagatgctgaaca |
28668201 |
T |
|
| Q |
447 |
caatgaact |
455 |
Q |
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|||||||| |
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| T |
28668200 |
taatgaact |
28668192 |
T |
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