View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8031_low_5 (Length: 467)
Name: NF8031_low_5
Description: NF8031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8031_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 17 - 456
Target Start/End: Complemental strand, 363540 - 363101
Alignment:
| Q |
17 |
aggtggtgtcagtaaccttctccctgtgactgacaaaggaatggcaccaaatgcttcgacaaagcggggattaggagtttacatgtccgcatgccaaacg |
116 |
Q |
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| T |
363540 |
aggtggtgtcagtaaccttctccctgtcactgacaaaggaatgacaccaaatgcttcgacaaagcggggattaggagtttacatgtccgcatgccaaacg |
363441 |
T |
|
| Q |
117 |
ggacagattacaggaaaaggtcgcattcgttacaagagttattcggtcagtggttgttatttcactgaaacgttgatttactgcatcaagtcttttgaaa |
216 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
363440 |
ggacagattacatgaaaaggtcgcattcgttacaagagtcattcggtcagaggttgttatttcactgaaacgttgatttactgcatcaagtcttttgaaa |
363341 |
T |
|
| Q |
217 |
acaacgagttttcttataagaacgtatacgacaaggtgttagatacaatgttagctgataatatgaaccacttacctgggttgtatggctcgccagaaca |
316 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
363340 |
acaacgagttttcttataagaatgtatacgacaaggtgttagatacaatgttagctgataatatgaaccacttacctgggttgtatggctcgccagaata |
363241 |
T |
|
| Q |
317 |
aatcaagttaaaatttctaagtctcgaccaggtaaaagtacaggagaatccaatgcctaagtctcatgatcatgatccccatcattaccgacggaattat |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
363240 |
aatcaagttaaaatttctaagtctcgaccaggtaaaagtacaggagaattcaatgcctaagtctcatgatcatgatccccatcgttaccgtcggaattat |
363141 |
T |
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| Q |
417 |
tccggatcatcttcctccatgtctccaaatattgctgatg |
456 |
Q |
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| T |
363140 |
tccggatcatcttcctccatgtctccaaatattgctgatg |
363101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 16 - 409
Target Start/End: Original strand, 41023695 - 41024094
Alignment:
| Q |
16 |
caggtggtgtcagtaaccttctccctgtgactgacaaaggaatggcaccaaatgcttcgacaaagcggggattaggagtttacatgtccgcatgccaaac |
115 |
Q |
| |
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|||||||||||||||||||||||||| | ||||||||| |||| ||||||| ||||||| |||| || || || | |||||| ||||||| ||| |||| |
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| T |
41023695 |
caggtggtgtcagtaaccttctccctatcactgacaaacaaatgacaccaaaagcttcgaaaaagtggagaatatgtgtttacttgtccgcttgctaaac |
41023794 |
T |
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| Q |
116 |
gggacagattacaggaaaaggtcgcattcgttacaagag------ttattcggtcagtggttgttatttcactgaaacgttgatttactgcatcaagtct |
209 |
Q |
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|| |||||| || |||| || |||| |||| ||| || || ||| | |||| |||| ||||||||||||||||||| |||||||||| |
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| T |
41023795 |
ttgatagattatagaaaaatatcacatttattacgagaagacggattcttgggtaactggtgcatattgcactgaaacgttgatttacatcatcaagtct |
41023894 |
T |
|
| Q |
210 |
tttgaaaacaacgagttttcttataagaacgtatacgacaaggtgttagatacaatgttagctgataatatgaaccacttacctgggttgtatggctcgc |
309 |
Q |
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||| | |||||||| ||||| |||||||| ||||||||| || | || | ||||||||||||||| |||||| |||||| ||||||||||||||||| |
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| T |
41023895 |
tttaagaacaacgatttttcgtataagaatgtatacgactcagtatgtgaaaaaatgttagctgataagatgaacaacttacttgggttgtatggctcgc |
41023994 |
T |
|
| Q |
310 |
cagaacaaatcaagttaaaatttctaagtctcgaccaggtaaaagtacaggagaatccaatgcctaagtctcatgatcatgatccccatcattaccgacg |
409 |
Q |
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|| |||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| || ||||||||||||||| ||||| || ||||||||| |
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| T |
41023995 |
cataacaaatcaagttaaaatttataagtctcgaccatgtaaaagtagaggagaatccaatgtctgagtctcatgatcatgttccccttcgttaccgacg |
41024094 |
T |
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